Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRE67_RS23930 Genome accession   NZ_CP128153
Coordinates   4737980..4738567 (+) Length   195 a.a.
NCBI ID   WP_286122646.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4732980..4743567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS23895 (QRE67_23890) - 4733699..4733905 (+) 207 WP_286122639.1 DUF1657 domain-containing protein -
  QRE67_RS23900 (QRE67_23895) - 4734124..4734588 (+) 465 WP_286122640.1 YhcN/YlaJ family sporulation lipoprotein -
  QRE67_RS23905 (QRE67_23900) spoVAC 4734623..4735099 (+) 477 WP_286122641.1 stage V sporulation protein AC -
  QRE67_RS23910 (QRE67_23905) spoVAD 4735100..4736113 (+) 1014 WP_286122642.1 stage V sporulation protein AD -
  QRE67_RS23915 (QRE67_23910) spoVAE 4736114..4736464 (+) 351 WP_286122643.1 stage V sporulation protein AE -
  QRE67_RS23920 (QRE67_23915) - 4736476..4736682 (+) 207 WP_286122644.1 DUF1657 domain-containing protein -
  QRE67_RS23925 (QRE67_23920) - 4736703..4737572 (+) 870 WP_286122645.1 DUF421 domain-containing protein -
  QRE67_RS23930 (QRE67_23925) clpP 4737980..4738567 (+) 588 WP_286122646.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRE67_RS23935 (QRE67_23930) - 4738695..4738949 (-) 255 WP_286122647.1 HPr family phosphocarrier protein -
  QRE67_RS23940 (QRE67_23935) whiA 4738971..4739921 (-) 951 WP_286122648.1 DNA-binding protein WhiA -
  QRE67_RS23945 (QRE67_23940) - 4740020..4740973 (-) 954 WP_286122649.1 YvcK family protein -
  QRE67_RS23950 (QRE67_23945) rapZ 4740977..4741858 (-) 882 WP_286122650.1 RNase adapter RapZ -
  QRE67_RS23955 (QRE67_23950) - 4741878..4742336 (-) 459 WP_286122651.1 8-oxo-dGTP diphosphatase -
  QRE67_RS23960 (QRE67_23955) - 4742478..4743284 (-) 807 WP_286122652.1 DUF368 domain-containing protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21634.96 Da        Isoelectric Point: 5.3498

>NTDB_id=846366 QRE67_RS23930 WP_286122646.1 4737980..4738567(+) (clpP) [Bacillus sp. DX3.1]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNRILAERTGQ
PLEVLERDTDRDNFMTAERALEYGLIDKIFTKSSK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=846366 QRE67_RS23930 WP_286122646.1 4737980..4738567(+) (clpP) [Bacillus sp. DX3.1]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCACGCCTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AGGATCCAGAAAAAGATATTCACATATACATCAACAGCCCTGGCGGTTCTATCACAGCGGGTATGGCAATTTACGATACA
ATGCAATTTATTAAACCACAAGTATCAACAATTTGTATCGGTATGGCAGCATCTATGGGTGCATTCCTACTTGCAGCAGG
TGAAAAAGGAAAACGCTTCGCTCTTCCAAACAGTGAAGTTATGATTCACCAACCACTTGGCGGCGCACAAGGACAAGCAA
CTGAAATTGAAATCGCTGCAAAACGCATTCTATTCTTACGCGAAAAACTAAACCGAATTCTTGCTGAGCGCACAGGTCAA
CCACTAGAAGTACTTGAACGCGACACAGATCGCGACAACTTCATGACAGCTGAAAGAGCACTAGAATACGGTCTTATCGA
TAAAATCTTTACAAAATCTTCGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.155

98.974

0.892
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.358

98.974

0.667
  clpP Streptococcus thermophilus LMG 18311

59.067

98.974

0.585
  clpP Streptococcus thermophilus LMD-9

59.067

98.974

0.585
  clpP Streptococcus pneumoniae TIGR4

57.732

99.487

0.574
  clpP Streptococcus pneumoniae D39

57.732

99.487

0.574
  clpP Lactococcus lactis subsp. cremoris KW2

57.732

99.487

0.574
  clpP Streptococcus pneumoniae Rx1

57.732

99.487

0.574
  clpP Streptococcus pneumoniae R6

57.732

99.487

0.574
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.67

99.487

0.554
  clpP Streptococcus pyogenes JRS4

56.316

97.436

0.549
  clpP Streptococcus pyogenes MGAS315

56.316

97.436

0.549
  clpP Streptococcus mutans UA159

55.497

97.949

0.544