Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRY64_RS15630 Genome accession   NZ_CP128152
Coordinates   2554941..2555522 (+) Length   193 a.a.
NCBI ID   WP_048525873.1    Uniprot ID   A0A1J9UU65
Organism   Bacillus albus strain SXL388     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2549941..2560522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS15600 (QRY64_15590) - 2550233..2550691 (+) 459 Protein_2536 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  QRY64_RS15605 (QRY64_15595) - 2551076..2552443 (+) 1368 WP_286120351.1 lytic polysaccharide monooxygenase -
  QRY64_RS15610 (QRY64_15600) - 2552561..2552995 (-) 435 WP_048525877.1 GNAT family N-acetyltransferase -
  QRY64_RS15615 (QRY64_15605) rpiA 2553102..2553767 (-) 666 WP_083588197.1 ribose 5-phosphate isomerase A -
  QRY64_RS15620 (QRY64_15610) - 2553769..2554089 (-) 321 WP_048525875.1 2Fe-2S iron-sulfur cluster-binding protein -
  QRY64_RS15625 (QRY64_15615) - 2554233..2554919 (+) 687 WP_048525874.1 RNA polymerase subunit sigma-70 -
  QRY64_RS15630 (QRY64_15620) clpP 2554941..2555522 (+) 582 WP_048525873.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRY64_RS15635 (QRY64_15625) - 2555568..2556425 (-) 858 WP_071757630.1 glycine betaine ABC transporter substrate-binding protein -
  QRY64_RS15640 (QRY64_15630) - 2556597..2557802 (+) 1206 WP_048525871.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  QRY64_RS15645 (QRY64_15635) - 2557795..2558631 (+) 837 WP_001059838.1 proline/glycine betaine ABC transporter permease -
  QRY64_RS15650 (QRY64_15640) - 2559034..2559201 (+) 168 WP_071757629.1 septum formation initiator -
  QRY64_RS15655 (QRY64_15645) - 2559315..2560151 (+) 837 WP_053082837.1 PP2C family serine/threonine-protein phosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21179.41 Da        Isoelectric Point: 4.9105

>NTDB_id=846297 QRY64_RS15630 WP_048525873.1 2554941..2555522(+) (clpP) [Bacillus albus strain SXL388]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINEMIAEKTGQ
PIDRVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=846297 QRY64_RS15630 WP_048525873.1 2554941..2555522(+) (clpP) [Bacillus albus strain SXL388]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGCAGTGTCGTAGCGCAATTATTATTTTTAGAAGCGG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATCAAACCAGATGTACAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCGCTACCTAACAGTGAAATTATGATTCATCAACCGCTTGGTGGTGCAAAGGGGCAGGCTA
CGGAAATTGAAATAACAGCAAAAAGGATATTGAAGTTAAAGCATGATATTAATGAAATGATTGCAGAAAAAACGGGGCAA
CCAATTGACAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCAAAAGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9UU65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.016

98.964

0.663
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus pneumoniae Rx1

54.167

99.482

0.539
  clpP Streptococcus pneumoniae D39

54.167

99.482

0.539
  clpP Streptococcus pneumoniae R6

54.167

99.482

0.539
  clpP Streptococcus pneumoniae TIGR4

54.167

99.482

0.539
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

97.927

0.503
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487