Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRE62_RS29565 Genome accession   NZ_CP128149
Coordinates   5000843..5001424 (+) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus mycoides strain SIN3.2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4995843..5006424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE62_RS29530 (QRE62_29525) - 4996824..4997030 (+) 207 WP_000216167.1 DUF1657 domain-containing protein -
  QRE62_RS29535 (QRE62_29530) - 4997137..4997625 (+) 489 WP_002143725.1 YhcN/YlaJ family sporulation lipoprotein -
  QRE62_RS29540 (QRE62_29535) spoVAC 4997654..4998130 (+) 477 WP_002034730.1 stage V sporulation protein AC -
  QRE62_RS29545 (QRE62_29540) spoVAD 4998131..4999147 (+) 1017 WP_113708895.1 stage V sporulation protein AD -
  QRE62_RS29550 (QRE62_29545) spoVAE 4999144..4999494 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  QRE62_RS29555 (QRE62_29550) - 4999506..4999712 (+) 207 WP_000215909.1 DUF1657 domain-containing protein -
  QRE62_RS29560 (QRE62_29555) - 4999733..5000602 (+) 870 WP_105589896.1 DUF421 domain-containing protein -
  QRE62_RS29565 (QRE62_29560) clpP 5000843..5001424 (+) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRE62_RS29570 (QRE62_29565) - 5001685..5001933 (-) 249 WP_002068337.1 HPr family phosphocarrier protein -
  QRE62_RS29575 (QRE62_29570) whiA 5001957..5002907 (-) 951 WP_002016082.1 DNA-binding protein WhiA -
  QRE62_RS29580 (QRE62_29575) - 5002996..5003949 (-) 954 WP_113708894.1 YvcK family protein -
  QRE62_RS29585 (QRE62_29580) rapZ 5003953..5004834 (-) 882 WP_002016084.1 RNase adapter RapZ -
  QRE62_RS29590 (QRE62_29585) - 5004855..5005313 (-) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  QRE62_RS29595 (QRE62_29590) - 5005529..5006335 (-) 807 WP_113708893.1 DUF368 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=846266 QRE62_RS29565 WP_001049163.1 5000843..5001424(+) (clpP) [Bacillus mycoides strain SIN3.2]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=846266 QRE62_RS29565 WP_001049163.1 5000843..5001424(+) (clpP) [Bacillus mycoides strain SIN3.2]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAGGA
TCGCATCATTATGCTTGGTAGCGCAATTGATGACAATGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATTTACATCAACAGCCCTGGTGGTTCTATCACAGCTGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTACGCACTTCCAAACAGTGAAGTTATGATTCACCAACCACTTGGCGGTGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAATTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTTCTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554