Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRD88_RS15835 Genome accession   NZ_CP128114
Coordinates   3051135..3051731 (+) Length   198 a.a.
NCBI ID   WP_024427684.1    Uniprot ID   -
Organism   Bacillus safensis strain G6S3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046135..3056731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS15820 (QRD88_15815) abc-f 3047088..3048647 (-) 1560 WP_286099157.1 ribosomal protection-like ABC-F family protein -
  QRD88_RS15825 (QRD88_15820) - 3049042..3050208 (-) 1167 WP_286098755.1 macrolide family glycosyltransferase -
  QRD88_RS15835 (QRD88_15830) clpP 3051135..3051731 (+) 597 WP_024427684.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRD88_RS15840 (QRD88_15835) - 3051792..3052370 (-) 579 WP_024427683.1 TIGR00730 family Rossman fold protein -
  QRD88_RS15845 (QRD88_15840) - 3052508..3052849 (+) 342 WP_024427682.1 MazG-like family protein -
  QRD88_RS15850 (QRD88_15845) - 3052876..3054498 (-) 1623 WP_024427681.1 SulP family inorganic anion transporter -
  QRD88_RS15855 (QRD88_15850) - 3054536..3055117 (-) 582 WP_208946346.1 carbonic anhydrase -
  QRD88_RS15860 (QRD88_15855) - 3055671..3056648 (+) 978 WP_024423546.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21832.00 Da        Isoelectric Point: 4.6835

>NTDB_id=845984 QRD88_RS15835 WP_024427684.1 3051135..3051731(+) (clpP) [Bacillus safensis strain G6S3]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=845984 QRD88_RS15835 WP_024427684.1 3051135..3051731(+) (clpP) [Bacillus safensis strain G6S3]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
AGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTCGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCCTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGAAGACCAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.939

100

0.939
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53