Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRD87_RS16960 Genome accession   NZ_CP128109
Coordinates   3239378..3239974 (+) Length   198 a.a.
NCBI ID   WP_007500118.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3234378..3244974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS16940 (QRD87_16940) nikA 3234711..3236354 (-) 1644 WP_035389467.1 nickel ABC transporter substrate-binding protein -
  QRD87_RS16945 (QRD87_16945) - 3236642..3237811 (-) 1170 WP_144610031.1 macrolide family glycosyltransferase -
  QRD87_RS16950 (QRD87_16950) - 3237998..3238549 (-) 552 WP_144625687.1 hypothetical protein -
  QRD87_RS16960 (QRD87_16960) clpP 3239378..3239974 (+) 597 WP_007500118.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRD87_RS16965 (QRD87_16965) - 3240030..3240608 (-) 579 WP_041091288.1 TIGR00730 family Rossman fold protein -
  QRD87_RS16970 (QRD87_16970) - 3240745..3241086 (+) 342 WP_008347798.1 MazG-like family protein -
  QRD87_RS16975 (QRD87_16975) - 3241116..3242738 (-) 1623 WP_025208022.1 SulP family inorganic anion transporter -
  QRD87_RS16980 (QRD87_16980) - 3242776..3243357 (-) 582 WP_024719876.1 carbonic anhydrase -
  QRD87_RS16985 (QRD87_16985) - 3243911..3244888 (+) 978 WP_046345025.1 D-glycerate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21846.03 Da        Isoelectric Point: 4.6905

>NTDB_id=845871 QRD87_RS16960 WP_007500118.1 3239378..3239974(+) (clpP) [Bacillus altitudinis strain D9_B_49]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=845871 QRD87_RS16960 WP_007500118.1 3239378..3239974(+) (clpP) [Bacillus altitudinis strain D9_B_49]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTCTTCTTAGAAGCTG
AGGATCCAGAAAAAGATATCTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTATGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCGCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.434

100

0.934
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53