Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QSG86_RS03160 Genome accession   NZ_CP127915
Coordinates   462439..463665 (+) Length   408 a.a.
NCBI ID   WP_317030171.1    Uniprot ID   A0AA97EZD5
Organism   Acinetobacter sp. SAAs474     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457439..468665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG86_RS03120 (QSG86_03110) rimP 457980..458504 (-) 525 WP_317030168.1 ribosome maturation factor RimP -
  QSG86_RS03145 (QSG86_03135) secG 459301..459630 (-) 330 WP_317030169.1 preprotein translocase subunit SecG -
  QSG86_RS03150 (QSG86_03140) tpiA 459644..460435 (-) 792 WP_317030170.1 triose-phosphate isomerase -
  QSG86_RS03155 (QSG86_03145) pilB 460702..462408 (+) 1707 WP_317032654.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSG86_RS03160 (QSG86_03150) pilC 462439..463665 (+) 1227 WP_317030171.1 type II secretion system F family protein Machinery gene
  QSG86_RS03165 (QSG86_03155) pilD 463665..464525 (+) 861 WP_317030172.1 A24 family peptidase Machinery gene
  QSG86_RS03170 (QSG86_03160) coaE 464534..465175 (+) 642 WP_317030173.1 dephospho-CoA kinase -
  QSG86_RS03175 (QSG86_03165) - 465179..466096 (-) 918 WP_317030174.1 DMT family transporter -
  QSG86_RS03180 (QSG86_03170) rlmB 466134..466886 (-) 753 WP_317030175.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QSG86_RS03185 (QSG86_03175) - 467080..467403 (-) 324 WP_317030176.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45823.79 Da        Isoelectric Point: 9.9166

>NTDB_id=845202 QSG86_RS03160 WP_317030171.1 462439..463665(+) (pilC) [Acinetobacter sp. SAAs474]
MKINKNKKMYRFHYEGINGKGIKIKGEITAINLIMAKITLRKQGLNIQFIREKRANIFEHLGAKKVTTLDIAIFTRQLAT
MLKSGIPLVQSFDIVHDGLDKPAMRRIILGIKSEIESGHTLADALKKYPQYFDRLFCALIESGELSGSLDIMLDRVAIYK
EKNELLKQKIKKAIKYPLTVIMVAMIVTLILMLKVVPIFEELFISFGAELPLFTQLIVQLSKWVQQYWLILICTTTISII
STVTLKKRSQRFQDLSDHLALKFPIFGQLVYKSIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYKAVVMQIRDHVA
AGQQLQLAMKMSNKFPNMAIQMVAIGEESGALDCMLDKVAIYYENEVDHAVDGLTSMMEPLIMAILGLLIGSLVIAMYLP
IFQMGSII

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=845202 QSG86_RS03160 WP_317030171.1 462439..463665(+) (pilC) [Acinetobacter sp. SAAs474]
ATGAAAATAAATAAAAATAAGAAAATGTATCGCTTTCACTACGAGGGTATTAATGGCAAAGGGATAAAAATTAAAGGAGA
AATAACGGCAATCAACTTAATTATGGCAAAAATTACTTTACGTAAACAAGGCCTTAATATTCAATTTATACGAGAAAAAA
GAGCAAATATTTTCGAACATCTCGGTGCTAAGAAAGTCACCACATTGGATATCGCTATTTTTACACGTCAATTGGCCACC
ATGTTAAAGTCGGGTATACCTTTAGTACAAAGCTTCGATATTGTTCATGATGGCTTGGATAAACCTGCAATGCGCAGGAT
AATTCTGGGGATTAAAAGCGAAATCGAAAGTGGTCACACCTTAGCAGATGCATTAAAAAAATATCCACAATATTTTGATC
GTTTATTCTGTGCCTTGATTGAATCGGGAGAACTCTCTGGCTCACTTGATATCATGCTTGATCGAGTTGCAATTTATAAA
GAAAAAAATGAACTCCTTAAACAAAAAATTAAAAAAGCCATCAAATATCCGCTCACTGTCATTATGGTTGCCATGATTGT
CACGTTAATTTTAATGCTCAAAGTTGTTCCCATTTTTGAAGAACTTTTTATTTCATTTGGTGCCGAACTGCCTCTATTTA
CCCAACTGATTGTCCAACTGTCTAAATGGGTACAGCAATATTGGCTCATTTTGATCTGCACAACCACGATAAGCATCATC
AGTACTGTAACATTAAAAAAACGTAGCCAAAGATTTCAAGATCTATCCGATCATCTGGCGTTAAAATTCCCTATTTTTGG
TCAACTCGTCTATAAAAGTATTATTGCACGTTATAGTCGAACTTTAGCAACAACCTTTGCTGCTGGGGTTCCGCTCATTG
ATGCTTTAGAATCGACTGCAGGCGCCACAAATAATGTCATCTATAAAGCAGTGGTCATGCAAATTCGTGATCATGTCGCT
GCAGGTCAACAGCTACAACTGGCCATGAAAATGAGTAACAAATTTCCCAATATGGCGATTCAAATGGTTGCAATTGGTGA
GGAGTCTGGAGCATTAGACTGCATGTTAGATAAAGTTGCTATTTATTATGAAAATGAAGTCGATCATGCTGTTGATGGCC
TGACATCAATGATGGAACCCTTAATCATGGCAATTTTAGGCCTTTTAATCGGTAGTTTAGTGATTGCCATGTATTTACCA
ATTTTCCAAATGGGTTCAATTATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.343

100

0.703
  pilC Acinetobacter baylyi ADP1

68.873

100

0.689
  pilC Legionella pneumophila strain ERS1305867

51.351

99.755

0.512
  pilC Pseudomonas stutzeri DSM 10701

52.393

97.304

0.51
  pilG Neisseria gonorrhoeae MS11

43.704

99.265

0.434
  pilG Neisseria meningitidis 44/76-A

43.457

99.265

0.431
  pilC Vibrio cholerae strain A1552

40.931

100

0.409
  pilC Vibrio campbellii strain DS40M4

38.557

98.529

0.38