Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   L6410_RS06080 Genome accession   NZ_AP024276
Coordinates   1211103..1211945 (-) Length   280 a.a.
NCBI ID   WP_237395100.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1206103..1216945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS06060 - 1207350..1207478 (-) 129 Protein_1163 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  L6410_RS06065 (SUT286_11650) rplL 1207608..1207970 (-) 363 WP_024392290.1 50S ribosomal protein L7/L12 -
  L6410_RS06070 (SUT286_11660) rplJ 1208038..1208535 (-) 498 WP_024392291.1 50S ribosomal protein L10 -
  L6410_RS06075 (SUT286_11670) topA 1208917..1211010 (-) 2094 WP_237395099.1 type I DNA topoisomerase -
  L6410_RS06080 (SUT286_11680) dprA 1211103..1211945 (-) 843 WP_237395100.1 DNA-processing protein DprA Machinery gene
  L6410_RS06085 (SUT286_11690) - 1212197..1212754 (-) 558 WP_237395101.1 sugar O-acetyltransferase -
  L6410_RS06090 (SUT286_11700) - 1212765..1213025 (-) 261 WP_024392295.1 metal-sensitive transcriptional regulator -
  L6410_RS06095 (SUT286_11710) - 1213132..1213467 (+) 336 WP_237395102.1 rhodanese-like domain-containing protein -
  L6410_RS06100 (SUT286_11720) - 1213464..1215119 (+) 1656 WP_237395103.1 FAD-dependent oxidoreductase -
  L6410_RS06105 (SUT286_11730) - 1215228..1215779 (+) 552 WP_237396725.1 DUF1836 domain-containing protein -
  L6410_RS06110 (SUT286_11740) trhA 1215769..1216419 (+) 651 WP_024397131.1 PAQR family membrane homeostasis protein TrhA -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31392.22 Da        Isoelectric Point: 8.4451

>NTDB_id=84481 L6410_RS06080 WP_237395100.1 1211103..1211945(-) (dprA) [Streptococcus parasuis strain SUT-286]
MNNFELFKWKKAGLSNLNINKVLAYQEKQGKKLTLRNVAVVSECKNPILFMENYKNLDTKACREEFNKYPSFSILDDIYP
TALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASENGMQSVQKIIKELNNRFVIVSGMARGIDSAAHIASLKNGGQTI
AVIGTGLDKVYPKENKELQHYIGKHHLVLTEYEPNAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIVDGKSDGCHHLIQEGAKCITSGLDILSDYRF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=84481 L6410_RS06080 WP_237395100.1 1211103..1211945(-) (dprA) [Streptococcus parasuis strain SUT-286]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGCTTGTCCAATCTTAATATTAATAAAGTTTTGGCCTATCAAGA
AAAACAAGGTAAAAAATTAACTCTACGGAATGTCGCTGTTGTATCTGAATGTAAAAACCCAATTCTTTTCATGGAAAATT
ATAAGAATTTAGATACGAAAGCTTGCCGGGAGGAATTTAATAAGTATCCATCTTTTTCAATTTTAGATGATATTTATCCC
ACAGCTTTAAAACAAATTTATAATCCACCAGTTCTCTTATTTTATCAAGGTGATCTTGAATTACTTGAAAAATCAAAATT
GGCAGTAGTAGGTACGCGCAATGCCAGTGAAAATGGCATGCAATCTGTTCAGAAAATTATCAAAGAACTCAATAATCGCT
TTGTCATTGTGAGTGGTATGGCTAGAGGGATTGATTCGGCAGCTCATATTGCGAGTTTGAAAAATGGCGGACAAACCATT
GCAGTGATTGGAACTGGATTAGATAAGGTATATCCTAAGGAAAACAAGGAGTTACAACACTATATTGGAAAACATCATTT
AGTACTGACAGAGTATGAACCGAATGCCCAGCCTTTAAAATACCATTTCCCTGAGCGAAATCGCATTATTGCCGGATTGG
TTGAAGGTCTGGTGGTCTGTGAGGCAAAAATGCGGTCTGGTAGCTTGATTACTTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTTTATGCCATTCCTGGTTCTATTGTGGATGGAAAATCAGATGGCTGTCATCATTTGATACAGGAAGGAGCAAAGTG
CATTACATCAGGCTTGGACATCCTTTCGGACTACCGATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

68.571

100

0.686
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

62.143

100

0.621
  dprA/cilB/dalA Streptococcus pneumoniae D39

62.143

100

0.621
  dprA/cilB/dalA Streptococcus pneumoniae R6

62.143

100

0.621
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

62.143

100

0.621
  dprA/cilB/dalA Streptococcus mitis SK321

62.143

100

0.621
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

61.429

100

0.614
  dprA Lactococcus lactis subsp. cremoris KW2

57.857

100

0.579
  dprA Vibrio campbellii strain DS40M4

35.495

100

0.371
  dprA Bacillus subtilis subsp. subtilis str. 168

50.249

71.786

0.361
  dprA Acinetobacter baumannii strain A118

36.861

97.857

0.361
  dprA Acinetobacter baumannii D1279779

36.861

97.857

0.361

Multiple sequence alignment