Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   L6410_RS03300 Genome accession   NZ_AP024276
Coordinates   656205..656909 (+) Length   234 a.a.
NCBI ID   WP_024396182.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 651205..661909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS03280 (SUT286_06120) - 653015..653674 (-) 660 WP_160864594.1 amino acid ABC transporter permease -
  L6410_RS03285 (SUT286_06130) - 653689..654387 (-) 699 WP_160864593.1 amino acid ABC transporter permease -
  L6410_RS03290 (SUT286_06140) - 654404..655243 (-) 840 WP_237396009.1 transporter substrate-binding domain-containing protein -
  L6410_RS03295 (SUT286_06150) - 655253..656014 (-) 762 WP_237396011.1 amino acid ABC transporter ATP-binding protein -
  L6410_RS03300 (SUT286_06160) micA 656205..656909 (+) 705 WP_024396182.1 response regulator YycF Regulator
  L6410_RS03305 (SUT286_06170) micB 656902..658251 (+) 1350 WP_024391261.1 cell wall metabolism sensor histidine kinase VicK Regulator
  L6410_RS03310 (SUT286_06180) vicX 658258..659061 (+) 804 WP_237396021.1 MBL fold metallo-hydrolase Regulator
  L6410_RS03315 (SUT286_06200) pbp2b 659378..661411 (+) 2034 WP_237396675.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26757.75 Da        Isoelectric Point: 4.8061

>NTDB_id=84471 L6410_RS03300 WP_024396182.1 656205..656909(+) (micA) [Streptococcus parasuis strain SUT-286]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALDIFETEFPDIVILDLMLPEIDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQGAVESSGTPELVIGDLVIVPDAFVAKKHGKELELT
HREFELLYHLAKHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYFIKAYD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=84471 L6410_RS03300 WP_024396182.1 656205..656909(+) (micA) [Streptococcus parasuis strain SUT-286]
ATGAAGAAAATTTTAATTGTTGATGATGAGAAACCAATCTCGGATATTATTAAATTCAATATGACACGTGAAGGATATGA
GGTAGTCACTGCGTTTGATGGACGTGAGGCGCTTGATATTTTTGAAACAGAGTTTCCAGATATTGTTATTTTAGATTTAA
TGCTTCCAGAAATAGATGGATTAGAAGTAGCACGGACGATTCGAAAAACAAGTAATGTTCCTATTTTAATGTTGTCAGCT
AAAGATAGTGAGTTTGATAAAGTTATTGGGCTTGAAATTGGTGCAGATGACTATGTGACAAAGCCATTCTCAAACCGTGA
ATTACAGGCGCGTGTTAAAGCTCTTCTTCGTCGAAGTGAATTGGCTGAGACGCAAGGAGCAGTTGAATCATCTGGTACTC
CAGAATTGGTAATCGGTGATTTGGTCATTGTTCCAGATGCTTTTGTAGCTAAGAAACATGGAAAAGAACTTGAACTAACA
CACCGTGAATTTGAATTATTGTATCATTTGGCCAAGCACATTGGGCAAGTCATGACGCGAGAGCATCTACTTGAGACTGT
TTGGGGATACGATTATTTTGGAGATGTACGTACTGTGGATGTGACAGTACGACGCTTGCGTGAAAAAATTGAAGACACTC
CAAGTCGTCCGGAATATATCTTGACACGCAGGGGAGTAGGTTATTTTATAAAAGCTTATGATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

83.983

98.718

0.829
  vicR Streptococcus mutans UA159

80.851

100

0.812
  covR Streptococcus salivarius strain HSISS4

43.29

98.718

0.427
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.043

98.291

0.423
  scnR Streptococcus mutans UA159

36.709

100

0.372

Multiple sequence alignment