Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   L6410_RS03305 Genome accession   NZ_AP024276
Coordinates   656902..658251 (+) Length   449 a.a.
NCBI ID   WP_024391261.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 651902..663251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS03280 (SUT286_06120) - 653015..653674 (-) 660 WP_160864594.1 amino acid ABC transporter permease -
  L6410_RS03285 (SUT286_06130) - 653689..654387 (-) 699 WP_160864593.1 amino acid ABC transporter permease -
  L6410_RS03290 (SUT286_06140) - 654404..655243 (-) 840 WP_237396009.1 transporter substrate-binding domain-containing protein -
  L6410_RS03295 (SUT286_06150) - 655253..656014 (-) 762 WP_237396011.1 amino acid ABC transporter ATP-binding protein -
  L6410_RS03300 (SUT286_06160) micA 656205..656909 (+) 705 WP_024396182.1 response regulator YycF Regulator
  L6410_RS03305 (SUT286_06170) micB 656902..658251 (+) 1350 WP_024391261.1 cell wall metabolism sensor histidine kinase VicK Regulator
  L6410_RS03310 (SUT286_06180) vicX 658258..659061 (+) 804 WP_237396021.1 MBL fold metallo-hydrolase Regulator
  L6410_RS03315 (SUT286_06200) pbp2b 659378..661411 (+) 2034 WP_237396675.1 penicillin-binding protein PBP2B -
  L6410_RS03320 (SUT286_06210) recR 661420..662016 (+) 597 WP_002935848.1 recombination mediator RecR -
  L6410_RS03325 (SUT286_06220) - 662125..663171 (+) 1047 WP_237396024.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51030.35 Da        Isoelectric Point: 4.5705

>NTDB_id=84472 L6410_RS03305 WP_024391261.1 656902..658251(+) (micB) [Streptococcus parasuis strain SUT-286]
MINQLRYLITTAEFWFVVILIGFLIALTVLLIENYRDNKQIQLLNKKVGALIDGNYSDVLDLRGSPEITEMANSLNDLSE
VIRLTHDHLEQEKIRLSSILSYMSDGVIATDRIGRIIMVNDMAQKQLGLKDHKQEQYFLLDVLELEDQYSLRELLSQTPE
IVLEKVNENQEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGEMDVELINFTAFVTFILNRFDQMKNSDAGKTYAIIRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGNITFSMKTTDSQLIISISDEGLGIPKADLPKIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWEEVAEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=84472 L6410_RS03305 WP_024391261.1 656902..658251(+) (micB) [Streptococcus parasuis strain SUT-286]
ATGATTAATCAATTACGCTATCTAATTACAACAGCTGAATTTTGGTTTGTTGTTATTTTGATTGGCTTTCTAATTGCGTT
GACAGTATTGTTGATAGAAAACTATCGTGACAATAAACAGATACAATTACTCAATAAAAAGGTTGGCGCCTTGATAGATG
GTAATTACTCTGATGTATTGGATTTGCGAGGAAGTCCAGAGATTACTGAAATGGCAAATTCACTGAATGATTTGTCAGAA
GTAATCCGCTTAACGCACGATCATCTAGAACAAGAAAAAATCCGTCTCAGTTCCATTCTTTCCTACATGAGTGATGGAGT
CATTGCTACAGATCGTATTGGCCGAATTATCATGGTCAATGATATGGCGCAGAAACAACTGGGGTTAAAAGATCATAAAC
AGGAGCAATATTTTTTACTTGATGTTCTAGAACTTGAAGACCAATATAGTCTGCGGGAGTTGTTATCCCAAACACCTGAA
ATCGTCTTAGAAAAAGTTAATGAGAATCAAGAATTTCTGACCTTGCGAGCTAATTTTGCAACGATTAGGAGCGAAAGTGG
CCTCATATCAGGTTTGGTTGTTGTCCTACATGATATGACGGAGCAGGCCAAGGAGGAACGTGAGCGCAGACTGTTTGTTT
CTAATGTCAGTCACGAATTGCGTACACCGTTGACTTCGGTTAAATCATATTTGGAAGCCTTGGATGAGGGAGCACTGACC
GAATCGGTTGCCCCAAGTTTTGTCAAGGTATCCTTAGATGAAACCAACCGGATGATGCGGATGATTACAGATCTTTTAAG
TTTATCTCGCATTGATAATCAGGTTGGAGAGATGGATGTAGAGCTAATCAACTTTACGGCTTTTGTCACTTTCATCTTGA
ATCGCTTTGATCAGATGAAGAATTCTGATGCTGGTAAGACCTACGCTATTATTCGTGATTACCAGATTAGTCCAATTTGG
GTTGAAATTGATACCGATAAGATGACGCAGGTACTGGATAATATTTTGAATAATGCTATCAAGTATTCTCCAGATGGGGG
AAATATTACCTTTAGTATGAAAACGACAGATAGTCAGCTAATTATTTCTATTTCAGATGAAGGTTTGGGAATTCCTAAAG
CTGATTTGCCTAAAATATTTGATCGTTTCTATCGAGTAGATAAAGCGCGTTCGAGAGCCCAAGGTGGCACTGGTTTAGGT
TTGGCGATTGCAAAAGAGATTGTAAAGCAACATAAAGGTTTCATTTGGGCTAAAAGTGAGTATGGACATGGTTCGACATT
TACGATTGTCTTACCATATAGTAAGGATATTGCACTGGATGAGTGGGAAGAGGTTGCTGAGGAAGAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

68.807

97.105

0.668
  vicK Streptococcus mutans UA159

69.479

89.755

0.624

Multiple sequence alignment