Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   L6410_RS03310 Genome accession   NZ_AP024276
Coordinates   658258..659061 (+) Length   267 a.a.
NCBI ID   WP_237396021.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 653258..664061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS03285 (SUT286_06130) - 653689..654387 (-) 699 WP_160864593.1 amino acid ABC transporter permease -
  L6410_RS03290 (SUT286_06140) - 654404..655243 (-) 840 WP_237396009.1 transporter substrate-binding domain-containing protein -
  L6410_RS03295 (SUT286_06150) - 655253..656014 (-) 762 WP_237396011.1 amino acid ABC transporter ATP-binding protein -
  L6410_RS03300 (SUT286_06160) micA 656205..656909 (+) 705 WP_024396182.1 response regulator YycF Regulator
  L6410_RS03305 (SUT286_06170) micB 656902..658251 (+) 1350 WP_024391261.1 cell wall metabolism sensor histidine kinase VicK Regulator
  L6410_RS03310 (SUT286_06180) vicX 658258..659061 (+) 804 WP_237396021.1 MBL fold metallo-hydrolase Regulator
  L6410_RS03315 (SUT286_06200) pbp2b 659378..661411 (+) 2034 WP_237396675.1 penicillin-binding protein PBP2B -
  L6410_RS03320 (SUT286_06210) recR 661420..662016 (+) 597 WP_002935848.1 recombination mediator RecR -
  L6410_RS03325 (SUT286_06220) - 662125..663171 (+) 1047 WP_237396024.1 D-alanine--D-alanine ligase -
  L6410_RS03330 (SUT286_06230) - 663259..663639 (+) 381 WP_237396026.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29621.66 Da        Isoelectric Point: 5.7725

>NTDB_id=84473 L6410_RS03310 WP_237396021.1 658258..659061(+) (vicX) [Streptococcus parasuis strain SUT-286]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDVESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=84473 L6410_RS03310 WP_237396021.1 658258..659061(+) (vicX) [Streptococcus parasuis strain SUT-286]
ATGATCGGAACAGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGAAAAAAAATCACCAGTCTTTTGGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGAGACTTGGATGTTGAGTCATTTGGTGTCAGTCATGATGCTGCTTGTCCGCAGTTCT
ACCGCTTTATGAAGGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTCAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTGCGTTCGGGGTCCTATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCAAGAAGATTTACCTAGGGCATTTGTCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACGGCGACTGTCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764

Multiple sequence alignment