Detailed information NTG0844569

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: VZG88_RS04640
• Genome accession: NZ_CP143871
• Coordinates: 935996..936676 (+)
• Length: 226 a.a.
• NCBI ID: WP_267128027.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB6
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 930996..941676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG88_RS04615 (VZG88_04615)	psbA	931294..932376 (-)	1083	WP_338431276.1	photosystem II q(b) protein	-
VZG88_RS04620 (VZG88_04620)	-	932478..932822 (-)	345	WP_208676689.1	histidine triad nucleotide-binding protein	-
VZG88_RS04625 (VZG88_04625)	-	932910..934448 (+)	1539	WP_208676691.1	YifB family Mg chelatase-like AAA ATPase	-
VZG88_RS04630 (VZG88_04630)	-	934486..935061 (-)	576	WP_208677313.1	hypothetical protein	-
VZG88_RS04635 (VZG88_04635)	psb29	935182..935952 (-)	771	WP_338438619.1	photosystem II biogenesis protein Psp29	-
VZG88_RS04640 (VZG88_04640)	clpP	935996..936676 (+)	681	WP_267128027.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
VZG88_RS04645 (VZG88_04645)	-	936686..937552 (-)	867	WP_338438620.1	PHP domain-containing protein	-
VZG88_RS04650 (VZG88_04650)	ilvC	937578..938570 (+)	993	WP_208676699.1	ketol-acid reductoisomerase	-
VZG88_RS04655 (VZG88_04655)	-	938698..938901 (-)	204	WP_228382953.1	hypothetical protein	-
VZG88_RS04660 (VZG88_04660)	-	938947..939183 (-)	237	WP_208677311.1	site-specific integrase	-
VZG88_RS04665 (VZG88_04665)	-	939398..941110 (+)	1713	WP_208677310.1	RNA-binding domain-containing protein	-
VZG88_RS04670 (VZG88_04670)	-	941291..941416 (+)	126	WP_338438621.1	hypothetical protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 24941.29 Da
• Isoelectric Point: 4.7477

>NTDB_id=844569 VZG88_RS04640 WP_267128027.1 935996..936676(+) (clpP) [Synechococcus elongatus IITB6]
MASFAKQRPKCTSGYNNEVFTDRAATENLMIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEA
EDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQA
KDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSANEAVEYGLIDRVIDRRALNTAA

Nucleotide

• Length: 681 bp

>NTDB_id=844569 VZG88_RS04640 WP_267128027.1 935996..936676(+) (clpP) [Synechococcus elongatus IITB6]
ATCGCAAGCTTTGCCAAGCAGCGACCGAAGTGCACCTCTGGCTACAATAACGAAGTCTTCACCGACCGTGCAGCAACCGA
GAACCTCATGATCCCCATCGTCGTCGAAGAATCTGGACGGGGCGAACGCGCCTTTGATATCTACTCGCGTCTGTTGCGGG
AGCGGATTATCTTCTTGGGCGAACCTGTCACCTCTGATGTCGCCAACCGCATCGTGGCGCAGTTGCTGTTCCTCGAAGCC
GAAGATCCCGAGAAAGACATTTACCTCTACATCAACTCGCCGGGCGGCTCGGTCTACGACGGCTTGGGCATCTTTGACAC
CATGAACCACATCCGTCCTGACGTCTCGACCGTCTGTGTCGGTCTGGCGGCCAGCATGGGCGCTTTCTTGCTGGCAGCAG
GTGCCAAAGGCAAGCGCACCAGCTTGGCTCACTCGCGGATCATGATTCACCAACCCTTGGGGGGTGCTCAGGGTCAGGCT
AAGGATATTGAGATCCAAGCCAACGAAATCCTCTACATCAAGCAGAACTTGAATGAGGTGTTGGCTGAGCGAACGGGTCA
GCCCCTCAGCCGCATTGAAGATGACACCGATCGCGACTTCTTCATGTCCGCCAATGAAGCGGTGGAATACGGTCTGATCG
ATCGCGTCATCGATCGCCGGGCCCTCAACACCGCCGCTTAG

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (40-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.021	83.186	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.921	84.513	0.549
clpP	Streptococcus pneumoniae Rx1	50.51	86.726	0.438
clpP	Streptococcus pneumoniae D39	50.51	86.726	0.438
clpP	Streptococcus pneumoniae R6	50.51	86.726	0.438
clpP	Streptococcus pneumoniae TIGR4	50.51	86.726	0.438
clpP	Lactococcus lactis subsp. cremoris KW2	50.769	86.283	0.438
clpP	Streptococcus thermophilus LMG 18311	50.256	86.283	0.434
clpP	Streptococcus thermophilus LMD-9	50.256	86.283	0.434
clpP	Streptococcus mutans UA159	49.231	86.283	0.425
clpP	Streptococcus pyogenes JRS4	48.718	86.283	0.42
clpP	Streptococcus pyogenes MGAS315	48.718	86.283	0.42
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	48.718	86.283	0.42