Detailed information NTG0844470

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: VZH09_RS04440
• Genome accession: NZ_CP143859
• Coordinates: 925990..926670 (+)
• Length: 226 a.a.
• NCBI ID: WP_261790082.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB7
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 920990..931670

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZH09_RS04415 (VZH09_04415)	psbA	921288..922370 (-)	1083	WP_338431276.1	photosystem II q(b) protein	-
VZH09_RS04420 (VZH09_04420)	-	922472..922816 (-)	345	WP_208676689.1	histidine triad nucleotide-binding protein	-
VZH09_RS04425 (VZH09_04425)	-	922904..924442 (+)	1539	WP_338462636.1	YifB family Mg chelatase-like AAA ATPase	-
VZH09_RS04430 (VZH09_04430)	-	924480..925055 (-)	576	WP_338462637.1	hypothetical protein	-
VZH09_RS04435 (VZH09_04435)	psb29	925176..926024 (-)	849	WP_261790063.1	photosystem II biogenesis protein Psp29	-
VZH09_RS04440 (VZH09_04440)	clpP	925990..926670 (+)	681	WP_261790082.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
VZH09_RS04445 (VZH09_04445)	-	926680..927573 (-)	894	WP_338462638.1	PHP domain-containing protein	-
VZH09_RS04450 (VZH09_04450)	ilvC	927572..928564 (+)	993	WP_208676699.1	ketol-acid reductoisomerase	-
VZH09_RS04455 (VZH09_04455)	fosX	930145..930549 (+)	405	WP_338462639.1	FosX/FosE/FosI family fosfomycin resistance hydrolase	-
VZH09_RS04460 (VZH09_04460)	-	930794..931222 (+)	429	WP_338462640.1	class I SAM-dependent methyltransferase	-
VZH09_RS04465 (VZH09_04465)	-	931458..931610 (-)	153	WP_338462641.1	hypothetical protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 24895.21 Da
• Isoelectric Point: 4.7477

>NTDB_id=844470 VZH09_RS04440 WP_261790082.1 925990..926670(+) (clpP) [Synechococcus elongatus IITB7]
MASFAKQRPKGTSGYNNEVFTDRAATENLMIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEA
EDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQA
KDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSANEAVEYGLIDRVIDRRALNTAA

Nucleotide

• Length: 681 bp

>NTDB_id=844470 VZH09_RS04440 WP_261790082.1 925990..926670(+) (clpP) [Synechococcus elongatus IITB7]
ATCGCCAGCTTTGCCAAGCAACGACCGAAGGGCACCTCTGGCTACAATAACGAAGTCTTCACCGACCGTGCAGCAACCGA
GAACCTCATGATCCCCATCGTCGTCGAAGAATCTGGACGGGGCGAACGCGCCTTTGATATCTACTCGCGTCTGTTGCGGG
AGCGGATTATCTTCTTGGGCGAGCCTGTCACCTCTGATGTCGCCAACCGCATCGTGGCGCAGTTGCTGTTCCTCGAAGCC
GAAGATCCCGAGAAAGACATTTACCTCTACATCAACTCGCCGGGCGGCTCGGTCTACGACGGCTTGGGCATCTTTGACAC
GATGAACCACATCCGTCCTGATGTGTCGACCGTCTGTGTTGGTCTGGCGGCTAGTATGGGCGCTTTCTTGCTAGCAGCAG
GTGCCAAAGGCAAGCGCACCAGCTTGGCTCACTCGCGGATCATGATTCACCAACCCTTGGGGGGTGCTCAGGGTCAGGCT
AAGGATATTGAGATCCAAGCCAACGAAATCCTCTACATCAAGCAGAACTTGAATGAGGTGTTGGCGGAGCGCACCGGTCA
GCCTCTCAGCCGCATTGAAGATGACACCGATCGCGACTTCTTCATGTCCGCCAATGAAGCGGTGGAATACGGTCTGATCG
ATCGCGTCATCGATCGCCGTGCCCTCAACACCGCCGCTTAG

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (40-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.021	83.186	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.921	84.513	0.549
clpP	Streptococcus pneumoniae Rx1	50.51	86.726	0.438
clpP	Streptococcus pneumoniae D39	50.51	86.726	0.438
clpP	Streptococcus pneumoniae R6	50.51	86.726	0.438
clpP	Streptococcus pneumoniae TIGR4	50.51	86.726	0.438
clpP	Lactococcus lactis subsp. cremoris KW2	50.769	86.283	0.438
clpP	Streptococcus thermophilus LMG 18311	50.256	86.283	0.434
clpP	Streptococcus thermophilus LMD-9	50.256	86.283	0.434
clpP	Streptococcus mutans UA159	49.231	86.283	0.425
clpP	Streptococcus pyogenes JRS4	48.718	86.283	0.42
clpP	Streptococcus pyogenes MGAS315	48.718	86.283	0.42
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	48.718	86.283	0.42