Detailed information NTG0844097

Bioinformatically predicted

Overview

• Name: comP
• Type: Machinery gene
• Locus tag: QP457_RS17165
• Genome accession: NZ_CP127405
• Coordinates: 3750517..3750960 (-)
• Length: 147 a.a.
• NCBI ID: WP_100553383.1
• Uniprot ID: A0AAW4GFI9
• Organism: Stenotrophomonas sp. As-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3748317..3760220	3750517..3750960	within	0

Gene organization within MGE regions

Location: 3748317..3760220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP457_RS17155	-	3748317..3749213 (-)	897	WP_205406021.1	serine hydrolase domain-containing protein	-
QP457_RS17160	-	3749234..3750346 (-)	1113	WP_205406022.1	isoprenylcysteine carboxylmethyltransferase family protein	-
QP457_RS17165	comP	3750517..3750960 (-)	444	WP_100553383.1	pilin	Machinery gene
QP457_RS17170	pilC	3751308..3752567 (+)	1260	WP_205406026.1	type II secretion system F family protein	Machinery gene
QP457_RS17175	-	3752576..3753439 (+)	864	WP_089236602.1	A24 family peptidase	-
QP457_RS17180	coaE	3753451..3754062 (+)	612	WP_180165743.1	dephospho-CoA kinase	-
QP457_RS17185	-	3754162..3754548 (-)	387	WP_100553386.1	hypothetical protein	-
QP457_RS17190	-	3755113..3756483 (-)	1371	WP_100460170.1	HAMP domain-containing sensor histidine kinase	-
QP457_RS17195	-	3756446..3757123 (-)	678	WP_025874286.1	response regulator transcription factor	-
QP457_RS17200	-	3757132..3757605 (-)	474	WP_180165745.1	hypothetical protein	-
QP457_RS17205	-	3757695..3758171 (-)	477	WP_205406023.1	hypothetical protein	-
QP457_RS17210	rimK	3758425..3759303 (-)	879	WP_100553389.1	30S ribosomal protein S6--L-glutamate ligase	-
QP457_RS17215	-	3759398..3759640 (-)	243	WP_180165749.1	hypothetical protein	-
QP457_RS17220	-	3759840..3760220 (-)	381	WP_180165751.1	DUF805 domain-containing protein	-

Sequence

Protein

• Length: 147 a.a.
• Molecular weight: 14474.58 Da
• Isoelectric Point: 8.4849

>NTDB_id=844097 QP457_RS17165 WP_100553383.1 3750517..3750960(-) (comP) [Stenotrophomonas sp. As-7]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTIRARVSEAAVLASGAKTTVAENIANNGGTIAAGSCLGVDTTAPATT
NVQSFTCADASGAIGVVTTAKAGSVTLTFTPTAGAGVAGTKWSCKATGGKAAYYPAECRTAAPATGG

Nucleotide

• Length: 444 bp

>NTDB_id=844097 QP457_RS17165 WP_100553383.1 3750517..3750960(-) (comP) [Stenotrophomonas sp. As-7]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTTGTTGCGATCATTGCCATCCTGGCCGCCATCGCTCT
GCCGGCTTACCAGGACTACACCATCCGCGCTCGCGTGTCCGAAGCTGCTGTCCTGGCTTCGGGTGCAAAGACGACTGTCG
CTGAGAACATCGCCAACAATGGCGGCACCATCGCTGCCGGTTCGTGCCTGGGCGTTGACACCACCGCTCCGGCCACCACC
AACGTTCAGTCCTTCACCTGCGCTGATGCTTCCGGCGCGATCGGTGTTGTTACCACTGCCAAGGCCGGTTCCGTGACCCT
GACCTTCACCCCGACCGCAGGCGCCGGTGTTGCCGGCACCAAGTGGTCCTGCAAGGCAACCGGTGGCAAGGCTGCGTACT
ACCCGGCCGAATGCCGTACCGCTGCTCCGGCCACGGGTGGCTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

• Pilin (bacterial filament) (Pilin) (36-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comP	Acinetobacter baylyi ADP1	51.678	100	0.524
pilA2	Legionella pneumophila strain ERS1305867	53.237	94.558	0.503
pilA2	Legionella pneumophila str. Paris	52.518	94.558	0.497
pilA	Ralstonia pseudosolanacearum GMI1000	44.242	100	0.497
pilA/pilA1	Eikenella corrodens VA1	40.909	100	0.429
pilA/pilAI	Pseudomonas stutzeri DSM 10701	41.379	98.639	0.408
pilA	Vibrio parahaemolyticus RIMD 2210633	39.286	95.238	0.374
comF	Acinetobacter baylyi ADP1	40	91.837	0.367