Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRY57_RS25150 Genome accession   NZ_CP127376
Coordinates   4537396..4537977 (+) Length   193 a.a.
NCBI ID   WP_026594081.1    Uniprot ID   A0A1H3RV46
Organism   Bacillus arachidis strain YX15     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4532396..4542977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS25115 (QRY57_25120) - 4533360..4533566 (+) 207 WP_000216162.1 DUF1657 domain-containing protein -
  QRY57_RS25120 (QRY57_25125) - 4533683..4534171 (+) 489 WP_026594087.1 YhcN/YlaJ family sporulation lipoprotein -
  QRY57_RS25125 (QRY57_25130) spoVAC 4534206..4534682 (+) 477 WP_026594086.1 stage V sporulation protein AC -
  QRY57_RS25130 (QRY57_25135) spoVAD 4534683..4535699 (+) 1017 WP_026594085.1 stage V sporulation protein AD -
  QRY57_RS25135 (QRY57_25140) spoVAE 4535696..4536046 (+) 351 WP_026594084.1 stage V sporulation protein AE -
  QRY57_RS25140 (QRY57_25145) - 4536058..4536264 (+) 207 WP_286016393.1 DUF1657 domain-containing protein -
  QRY57_RS25145 (QRY57_25150) - 4536285..4537154 (+) 870 WP_286016394.1 DUF421 domain-containing protein -
  QRY57_RS25150 (QRY57_25155) clpP 4537396..4537977 (+) 582 WP_026594081.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRY57_RS25155 (QRY57_25160) - 4538263..4538520 (-) 258 WP_026594080.1 HPr family phosphocarrier protein -
  QRY57_RS25160 (QRY57_25165) whiA 4538543..4539493 (-) 951 WP_026594079.1 DNA-binding protein WhiA -
  QRY57_RS25165 (QRY57_25170) - 4539580..4540533 (-) 954 WP_286016395.1 YvcK family protein -
  QRY57_RS25170 (QRY57_25175) rapZ 4540537..4541418 (-) 882 WP_286016396.1 RNase adapter RapZ -
  QRY57_RS25175 (QRY57_25180) - 4541439..4541897 (-) 459 WP_026594076.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21402.64 Da        Isoelectric Point: 5.0344

>NTDB_id=843803 QRY57_RS25150 WP_026594081.1 4537396..4537977(+) (clpP) [Bacillus arachidis strain YX15]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPDKDIHLYINSPGGSITAGMAIYDT
MQFIKPPVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=843803 QRY57_RS25150 WP_026594081.1 4537396..4537977(+) (clpP) [Bacillus arachidis strain YX15]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGACCCAGACAAAGATATTCACCTATACATCAACAGCCCTGGCGGTTCTATCACAGCGGGTATGGCAATTTACGATACA
ATGCAGTTCATTAAACCACCAGTATCAACAATTTGTATCGGTATGGCTGCATCTATGGGGGCTTTCCTACTTGCAGCAGG
TGAAAAAGGTAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGCGCACAAGGTCAAGCAA
CTGAAATTGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAATTAAACCAAATTCTTGCTGATCGCACAGGTCAA
CCATTAGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAGAGCACTAGAATACGGCTTAATCGA
TAAAATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3RV46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

97.409

0.658
  clpP Streptococcus thermophilus LMG 18311

60.938

99.482

0.606
  clpP Streptococcus thermophilus LMD-9

60.938

99.482

0.606
  clpP Lactococcus lactis subsp. cremoris KW2

59.375

99.482

0.591
  clpP Streptococcus pneumoniae D39

57.812

99.482

0.575
  clpP Streptococcus pneumoniae Rx1

57.812

99.482

0.575
  clpP Streptococcus pneumoniae R6

57.812

99.482

0.575
  clpP Streptococcus pneumoniae TIGR4

57.812

99.482

0.575
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

57.292

99.482

0.57
  clpP Streptococcus mutans UA159

55.959

100

0.56
  clpP Streptococcus pyogenes JRS4

56.25

99.482

0.56
  clpP Streptococcus pyogenes MGAS315

56.25

99.482

0.56