Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QRA08_RS06625 Genome accession   NZ_CP127331
Coordinates   1233961..1234542 (+) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus cereus strain BC116     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228961..1239542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS06590 (QRA08_06585) - 1229956..1230162 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  QRA08_RS06595 (QRA08_06590) - 1230256..1230741 (+) 486 WP_406653824.1 YhcN/YlaJ family sporulation lipoprotein -
  QRA08_RS06600 (QRA08_06595) spoVAC 1230771..1231247 (+) 477 WP_000095399.1 stage V sporulation protein AC -
  QRA08_RS06605 (QRA08_06600) spoVAD 1231248..1232264 (+) 1017 WP_000938972.1 stage V sporulation protein AD -
  QRA08_RS06610 (QRA08_06605) spoVAE 1232261..1232611 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  QRA08_RS06615 (QRA08_06610) - 1232623..1232829 (+) 207 WP_053563376.1 DUF1657 domain-containing protein -
  QRA08_RS06620 (QRA08_06615) - 1232850..1233719 (+) 870 WP_048564220.1 DUF421 domain-containing protein -
  QRA08_RS06625 (QRA08_06620) clpP 1233961..1234542 (+) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QRA08_RS06630 (QRA08_06625) - 1234944..1235192 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  QRA08_RS06635 (QRA08_06630) whiA 1235216..1236166 (-) 951 WP_000006566.1 DNA-binding protein WhiA -
  QRA08_RS06640 (QRA08_06635) yvcK 1236255..1237208 (-) 954 WP_000712187.1 YvcK family protein -
  QRA08_RS06645 (QRA08_06640) rapZ 1237212..1238093 (-) 882 WP_000138459.1 RNase adapter RapZ -
  QRA08_RS06650 (QRA08_06645) - 1238114..1238572 (-) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=843469 QRA08_RS06625 WP_001049162.1 1233961..1234542(+) (clpP) [Bacillus cereus strain BC116]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=843469 QRA08_RS06625 WP_001049162.1 1233961..1234542(+) (clpP) [Bacillus cereus strain BC116]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAGGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCGGGTATGGCAATCTATGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGAGCACAAGGTCAAGCAA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACTGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCTGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATTTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554