Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   VKP34_RS05890 Genome accession   NZ_CP142358
Coordinates   1160890..1161072 (-) Length   60 a.a.
NCBI ID   WP_111677352.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155890..1166072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS05875 (VKP34_05875) - 1156328..1157023 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  VKP34_RS05880 (VKP34_05880) - 1157262..1158197 (+) 936 WP_002989136.1 dihydroorotate oxidase -
  VKP34_RS05885 (VKP34_05885) - 1158497..1160359 (-) 1863 WP_002994378.1 heavy metal translocating P-type ATPase -
  VKP34_RS05890 (VKP34_05890) prx 1160890..1161072 (-) 183 WP_111677352.1 Paratox Regulator
  VKP34_RS05895 (VKP34_05895) mf2 1161312..1162070 (+) 759 WP_011184727.1 DNase Mf2 -
  VKP34_RS05900 (VKP34_05900) speC 1162181..1162888 (+) 708 WP_002985327.1 streptococcal pyrogenic exotoxin SpeC -
  VKP34_RS05905 (VKP34_05905) - 1162957..1163709 (-) 753 WP_023611694.1 CHAP domain-containing protein -
  VKP34_RS05910 (VKP34_05910) - 1163711..1164043 (-) 333 WP_326657796.1 phage holin -
  VKP34_RS05915 (VKP34_05915) - 1164056..1164376 (-) 321 WP_021733504.1 hypothetical protein -
  VKP34_RS05920 (VKP34_05920) - 1164387..1164998 (-) 612 WP_136284576.1 DUF1366 domain-containing protein -
  VKP34_RS05925 (VKP34_05925) - 1165001..1165162 (-) 162 WP_080471135.1 hypothetical protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 7051.01 Da        Isoelectric Point: 4.1079

>NTDB_id=840899 VKP34_RS05890 WP_111677352.1 1160890..1161072(-) (prx) [Streptococcus pyogenes strain 6702-99]
MLTYDEFKQAIDNGYITADAVMIVRKNGQIFDYVLPNEKIRDWEVVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=840899 VKP34_RS05890 WP_111677352.1 1160890..1161072(-) (prx) [Streptococcus pyogenes strain 6702-99]
ATGCTAACATACGACGAATTTAAGCAAGCGATTGACAATGGATATATCACAGCAGACGCAGTAATGATCGTGCGCAAGAA
CGGACAGATTTTTGATTATGTGTTGCCGAATGAGAAGATAAGAGATTGGGAGGTTGTGACAGACGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

90

100

0.9
  prx Streptococcus pyogenes MGAS8232

81.667

100

0.817
  prx Streptococcus pyogenes MGAS315

76.667

100

0.767
  prx Streptococcus pyogenes MGAS315

73.333

100

0.733
  prx Streptococcus pyogenes MGAS315

85.366

68.333

0.583
  prx Streptococcus pyogenes MGAS315

80.952

70

0.567
  prx Streptococcus pyogenes MGAS315

73.81

70

0.517