Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   VKP34_RS01405 Genome accession   NZ_CP142358
Coordinates   264469..265020 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 259469..270020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS01405 (VKP34_01405) comX/sigX/comX2/sigX2 264469..265020 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  VKP34_RS01410 (VKP34_01410) - 265631..266764 (+) 1134 WP_136112203.1 ISAs1-like element IS1548 family transposase -
  VKP34_RS01415 (VKP34_01415) - 266927..267454 (+) 528 WP_168642176.1 YqeG family HAD IIIA-type phosphatase -
  VKP34_RS01420 (VKP34_01420) yqeH 267454..268572 (+) 1119 WP_002991828.1 ribosome biogenesis GTPase YqeH -
  VKP34_RS01425 (VKP34_01425) yhbY 268597..268905 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  VKP34_RS01430 (VKP34_01430) - 268974..269606 (+) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=840862 VKP34_RS01405 WP_010921894.1 264469..265020(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 6702-99]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=840862 VKP34_RS01405 WP_010921894.1 264469..265020(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 6702-99]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.