Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   VKP55_RS05450 Genome accession   NZ_CP142351
Coordinates   1099024..1099206 (-) Length   60 a.a.
NCBI ID   WP_011184726.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1366     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094024..1104206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP55_RS05435 (VKP55_05435) - 1094463..1095158 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  VKP55_RS05440 (VKP55_05440) - 1095397..1096332 (+) 936 WP_021299339.1 dihydroorotate oxidase -
  VKP55_RS05445 (VKP55_05445) - 1096632..1098494 (-) 1863 WP_011284945.1 heavy metal translocating P-type ATPase -
  VKP55_RS05450 (VKP55_05450) prx 1099024..1099206 (-) 183 WP_011184726.1 hypothetical protein Regulator
  VKP55_RS05455 (VKP55_05455) mf2 1099446..1100204 (+) 759 WP_011184727.1 DNase Mf2 -
  VKP55_RS05460 (VKP55_05460) speC 1100315..1101022 (+) 708 WP_002985327.1 streptococcal pyrogenic exotoxin SpeC -
  VKP55_RS05465 (VKP55_05465) - 1101091..1102308 (-) 1218 WP_014635574.1 peptidoglycan amidohydrolase family protein -
  VKP55_RS05470 (VKP55_05470) - 1102427..1102654 (-) 228 WP_003058873.1 phage holin -
  VKP55_RS05475 (VKP55_05475) - 1102651..1102923 (-) 273 WP_011017397.1 hypothetical protein -
  VKP55_RS05480 (VKP55_05480) - 1102935..1103567 (-) 633 WP_011528779.1 hypothetical protein -
  VKP55_RS05485 (VKP55_05485) - 1103570..1103998 (-) 429 WP_136266864.1 DUF1617 family protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6936.91 Da        Isoelectric Point: 4.1954

>NTDB_id=840230 VKP55_RS05450 WP_011184726.1 1099024..1099206(-) (prx) [Streptococcus pyogenes strain SS1366]
MLTYDEFKQAIDNGYITADTVMIVRKNGQIFDYVLPNEKIKNGEIVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=840230 VKP55_RS05450 WP_011184726.1 1099024..1099206(-) (prx) [Streptococcus pyogenes strain SS1366]
ATGCTAACATACGACGAATTTAAACAAGCAATTGACAATGGATATATCACAGCAGACACAGTAATGATCGTGCGCAAGAA
CGGACAGATTTTTGATTATGTGTTGCCGAATGAGAAGATAAAGAATGGAGAAATTGTGACAGACGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

98.333

100

0.983
  prx Streptococcus pyogenes MGAS8232

86.667

100

0.867
  prx Streptococcus pyogenes MGAS315

78.333

100

0.783
  prx Streptococcus pyogenes MGAS315

75

100

0.75
  prx Streptococcus pyogenes MGAS315

83.721

71.667

0.6
  prx Streptococcus pyogenes MGAS315

85.366

68.333

0.583
  prx Streptococcus pyogenes MGAS315

71.429

70

0.5