Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   VKP35_RS06485 Genome accession   NZ_CP142349
Coordinates   1271212..1271394 (-) Length   60 a.a.
NCBI ID   WP_011017964.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 11RS100     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266212..1276394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP35_RS06470 (VKP35_06470) - 1266649..1267344 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  VKP35_RS06475 (VKP35_06475) - 1267583..1268518 (+) 936 WP_002989136.1 dihydroorotate oxidase -
  VKP35_RS06480 (VKP35_06480) - 1268818..1270680 (-) 1863 WP_002983921.1 heavy metal translocating P-type ATPase -
  VKP35_RS06485 (VKP35_06485) prx 1271212..1271394 (-) 183 WP_011017964.1 hypothetical protein Regulator
  VKP35_RS06490 (VKP35_06490) sda3 1271634..1272434 (+) 801 WP_011285611.1 streptodornase Sda3 -
  VKP35_RS06495 (VKP35_06495) - 1272705..1273139 (+) 435 WP_011017966.1 hypothetical protein -
  VKP35_RS06500 (VKP35_06500) - 1273209..1274414 (-) 1206 WP_326622487.1 glucosaminidase domain-containing protein -
  VKP35_RS06505 (VKP35_06505) - 1274402..1274524 (-) 123 WP_002988460.1 hypothetical protein -
  VKP35_RS06510 (VKP35_06510) - 1274526..1274981 (-) 456 WP_002988455.1 phage holin family protein -
  VKP35_RS06515 (VKP35_06515) - 1274991..1275623 (-) 633 WP_136305109.1 hypothetical protein -
  VKP35_RS06520 (VKP35_06520) - 1275626..1276054 (-) 429 WP_136040183.1 DUF1617 family protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6841.79 Da        Isoelectric Point: 4.5183

>NTDB_id=840054 VKP35_RS06485 WP_011017964.1 1271212..1271394(-) (prx) [Streptococcus pyogenes strain 11RS100]
MLTYDEFKQAIDNGYIAGDTVAIVRKDGQIFDYVLPHEKVKNGEVVTKEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=840054 VKP35_RS06485 WP_011017964.1 1271212..1271394(-) (prx) [Streptococcus pyogenes strain 11RS100]
ATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCGCAGGCGATACAGTAGCGATCGTGCGTAAAGA
CGGACAGATTTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACTAAGGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

100

100

1
  prx Streptococcus pyogenes MGAS315

85

100

0.85
  prx Streptococcus pyogenes MGAS315

80

100

0.8
  prx Streptococcus pyogenes MGAS315

73.333

100

0.733
  prx Streptococcus pyogenes MGAS315

90.244

68.333

0.617
  prx Streptococcus pyogenes MGAS315

83.721

71.667

0.6
  prx Streptococcus pyogenes MGAS315

78.571

70

0.55