Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QPK06_RS05620 Genome accession   NZ_CP126578
Coordinates   1193887..1194207 (+) Length   106 a.a.
NCBI ID   WP_019445026.1    Uniprot ID   -
Organism   Aeromonas veronii strain AV066     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188887..1199207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK06_RS05605 (QPK06_05605) yfbV 1189326..1189766 (-) 441 WP_043851809.1 terminus macrodomain insulation protein YfbV -
  QPK06_RS05610 (QPK06_05610) - 1190071..1191273 (+) 1203 WP_040065015.1 acetate kinase -
  QPK06_RS05615 (QPK06_05615) pta 1191329..1193509 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  QPK06_RS05620 (QPK06_05620) comEA/comE1 1193887..1194207 (+) 321 WP_019445026.1 ComEA family DNA-binding protein Machinery gene
  QPK06_RS05625 (QPK06_05625) galU 1194303..1195214 (+) 912 WP_124930176.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QPK06_RS05630 (QPK06_05630) - 1195428..1196825 (+) 1398 WP_040065012.1 peptide MFS transporter -
  QPK06_RS05635 (QPK06_05635) - 1196900..1197871 (-) 972 WP_021231964.1 response regulator -
  QPK06_RS05640 (QPK06_05640) - 1198112..1198810 (+) 699 WP_124930177.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11330.32 Da        Isoelectric Point: 9.6564

>NTDB_id=838916 QPK06_RS05620 WP_019445026.1 1193887..1194207(+) (comEA/comE1) [Aeromonas veronii strain AV066]
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTTEVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=838916 QPK06_RS05620 WP_019445026.1 1193887..1194207(+) (comEA/comE1) [Aeromonas veronii strain AV066]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACGACCGAGGTCGCCAAGGAGACCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCAGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGAGACATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae strain A1552

46.602

97.17

0.453
  comEA Vibrio cholerae C6706

46.602

97.17

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comE1/comEA Haemophilus influenzae Rd KW20

66.129

58.491

0.387
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368