Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QPK28_RS19235 Genome accession   NZ_CP126576
Coordinates   3633249..3633845 (+) Length   198 a.a.
NCBI ID   WP_003185550.1    Uniprot ID   A0A1J6GJE1
Organism   Bacillus licheniformis strain CQMB003     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3628249..3638845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS19210 - 3629208..3630653 (+) 1446 WP_080618537.1 glycoside hydrolase family 68 protein -
  QPK28_RS19215 - 3630733..3632280 (+) 1548 WP_059260908.1 glycoside hydrolase family 32 protein -
  QPK28_RS19220 - 3632345..3632497 (-) 153 WP_023856347.1 hypothetical protein -
  QPK28_RS19235 clpP 3633249..3633845 (+) 597 WP_003185550.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QPK28_RS19240 - 3634109..3634415 (+) 307 Protein_3741 IS3 family transposase -
  QPK28_RS19245 - 3634466..3635071 (-) 606 WP_059260904.1 DJ-1/PfpI family protein -
  QPK28_RS19250 - 3635106..3635681 (-) 576 WP_080618539.1 TIGR00730 family Rossman fold protein -
  QPK28_RS19255 - 3635793..3636128 (+) 336 WP_003185554.1 MazG-like family protein -
  QPK28_RS19260 - 3636115..3637092 (+) 978 WP_003185556.1 HD domain-containing protein -
  QPK28_RS19265 - 3637139..3638758 (-) 1620 WP_003185558.1 solute carrier family 23 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21803.99 Da        Isoelectric Point: 4.7982

>NTDB_id=838821 QPK28_RS19235 WP_003185550.1 3633249..3633845(+) (clpP) [Bacillus licheniformis strain CQMB003]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=838821 QPK28_RS19235 WP_003185550.1 3633249..3633845(+) (clpP) [Bacillus licheniformis strain CQMB003]
ATGAATTTAATACCTACAGTCATTGAACAGACGAACCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA
CCGTATCATTATGCTGGGATCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCTCAGCTTCTATTCCTTGAAGCCG
AAGATCCAGAAAAAGATATCAGCATCTATATTAACAGCCCTGGCGGCTCTATCACAGCCGGCATGGCGATTTATGACACC
ATGCAGTTCATTAAACCTCAAGTCTCTACGATTTGTACGGGAATGGCGGCATCTATGGGTGCGTTCCTTCTCGCAGCCGG
CGAGAAAGGGAAGCGCTACGCTCTTCCAAACAGTGAAGTCATGATCCACCAGCCGCTTGGCGGAGCGCAAGGTCAGGCAA
CAGAAATCGAAATTGCCGCGAAGCGCATTCTTTCATTGCGTGACAAACTGAACAAAATTCTTGCAGAGCGCACTGGACAA
CCGCTTGAAGTGATCGAGCGCGATACTGACCGTGACAACTTCAAAACGGCTGAAGAAGCAAAAGAATACGGCCTGATTGA
TAAAGTGCTCACACGCAATATCGACGCACAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6GJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.386

99.495

0.919
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.229

96.97

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

56.995

97.475

0.556
  clpP Streptococcus pneumoniae Rx1

56.995

97.475

0.556
  clpP Streptococcus pneumoniae D39

56.995

97.475

0.556
  clpP Streptococcus pneumoniae R6

56.995

97.475

0.556
  clpP Streptococcus pneumoniae TIGR4

56.995

97.475

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.922

97.475

0.535