Detailed information NTG0838735

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: LLUL007_RS09435
• Genome accession: NZ_CP126569
• Coordinates: 1829792..1830391 (+)
• Length: 199 a.a.
• NCBI ID: WP_011834647.1
• Uniprot ID: A0A166TF89
• Organism: Lactococcus cremoris strain UL007
• Function: degradation of ComX (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1830539..1831429	1829792..1830391	flank	148

Gene organization within MGE regions

Location: 1829792..1831429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUL007_RS09435 (LLUL007_09500)	clpP	1829792..1830391 (+)	600	WP_011834647.1	ATP-dependent Clp protease proteolytic subunit	Regulator
LLUL007_RS09440 (LLUL007_09505)	-	1830539..1831429 (+)	891	WP_205288062.1	IS982-like element ISLll1 family transposase	-

Sequence

Protein

• Length: 199 a.a.
• Molecular weight: 22052.21 Da
• Isoelectric Point: 4.7423

>NTDB_id=838735 LLUL007_RS09435 WP_011834647.1 1829792..1830391(+) (clpP) [Lactococcus cremoris strain UL007]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide

• Length: 600 bp

>NTDB_id=838735 LLUL007_RS09435 WP_011834647.1 1829792..1830391(+) (clpP) [Lactococcus cremoris strain UL007]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATTGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-195)

3D structure

• AlphaFold DB: A0A166TF89

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Lactococcus lactis subsp. cremoris KW2	100	100	1
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	99.497	100	0.995
clpP	Streptococcus mutans UA159	87.245	98.492	0.859
clpP	Streptococcus thermophilus LMD-9	86.735	98.492	0.854
clpP	Streptococcus thermophilus LMG 18311	86.735	98.492	0.854
clpP	Streptococcus pyogenes MGAS315	85.714	98.492	0.844
clpP	Streptococcus pyogenes JRS4	85.714	98.492	0.844
clpP	Streptococcus pneumoniae D39	84.615	97.99	0.829
clpP	Streptococcus pneumoniae TIGR4	84.615	97.99	0.829
clpP	Streptococcus pneumoniae R6	84.615	97.99	0.829
clpP	Streptococcus pneumoniae Rx1	84.615	97.99	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	95.477	0.553
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553