Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QPL84_RS13415 Genome accession   NZ_CP126525
Coordinates   2634027..2634608 (-) Length   193 a.a.
NCBI ID   WP_284557941.1    Uniprot ID   -
Organism   Bacillus toyonensis strain Puebla_S2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2629027..2639608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL84_RS13385 (QPL84_13385) - 2629643..2630128 (-) 486 WP_002093704.1 HIT family protein -
  QPL84_RS13390 (QPL84_13390) - 2630245..2630421 (-) 177 WP_001213777.1 hypothetical protein -
  QPL84_RS13395 (QPL84_13395) - 2630633..2630869 (+) 237 WP_284557939.1 hypothetical protein -
  QPL84_RS13400 (QPL84_13400) - 2630919..2631755 (-) 837 WP_001084771.1 proline/glycine betaine ABC transporter permease -
  QPL84_RS13405 (QPL84_13405) - 2631748..2632953 (-) 1206 WP_000370617.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  QPL84_RS13410 (QPL84_13410) - 2633125..2633982 (+) 858 WP_284557940.1 glycine betaine ABC transporter substrate-binding protein -
  QPL84_RS13415 (QPL84_13415) clpP 2634027..2634608 (-) 582 WP_284557941.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QPL84_RS13420 (QPL84_13420) - 2634630..2635316 (-) 687 WP_000337530.1 RNA polymerase subunit sigma-70 -
  QPL84_RS13425 (QPL84_13425) - 2635460..2635780 (+) 321 WP_001125384.1 2Fe-2S iron-sulfur cluster-binding protein -
  QPL84_RS13430 (QPL84_13430) rpiA 2635785..2636447 (+) 663 WP_001050005.1 ribose 5-phosphate isomerase A -
  QPL84_RS13435 (QPL84_13435) - 2636562..2636996 (+) 435 WP_001190873.1 GNAT family N-acetyltransferase -
  QPL84_RS13440 (QPL84_13440) exsF 2637649..2638152 (+) 504 WP_000953228.1 exosporium protein ExsF -
  QPL84_RS13445 (QPL84_13445) - 2638449..2638913 (+) 465 WP_000024959.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21222.47 Da        Isoelectric Point: 5.0845

>NTDB_id=838422 QPL84_RS13415 WP_284557941.1 2634027..2634608(-) (clpP) [Bacillus toyonensis strain Puebla_S2]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKEYGIVDAVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=838422 QPL84_RS13415 WP_284557941.1 2634027..2634608(-) (clpP) [Bacillus toyonensis strain Puebla_S2]
ATGAATGCAATTCCATATGTAGTAGAGCAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGAATTATTATTATCGGTTCAGAAATTAACGATCAAGTAGCGAGTAGTGTTGTAGCTCAATTATTATTTCTAGAAGCGG
AAGATGCAGAGAAAGATATATATTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCAATATTAGATACA
ATGAACTTAATTAAACCAGACGTGCAAACACTTTGTATGGGATTTGCAGCATCATTTGGTGCGTTGTTACTCTTATCAGG
TGCAAAAGGAAAACGATTTGCATTGCCTAACAGTGAAATTATGATTCATCAACCGCTTGGTGGTGCGCAAGGGCAGGCAA
CTGAAATCGAAATAACAGCAAAAAGAATTTTAAAGCTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGGGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGAATATGGGATTGTAGA
TGCTGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.11

98.964

0.684
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.254

97.927

0.668
  clpP Streptococcus thermophilus LMD-9

56.25

99.482

0.56
  clpP Streptococcus pneumoniae Rx1

56.25

99.482

0.56
  clpP Streptococcus pneumoniae D39

56.25

99.482

0.56
  clpP Streptococcus pneumoniae TIGR4

56.25

99.482

0.56
  clpP Streptococcus pneumoniae R6

56.25

99.482

0.56
  clpP Streptococcus thermophilus LMG 18311

56.25

99.482

0.56
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

97.927

0.503