Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VA249_RS14440 Genome accession   NZ_AP024165
Coordinates   3120066..3121175 (-) Length   369 a.a.
NCBI ID   WP_221068375.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya108     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3115066..3126175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA249_RS14410 (VYA_26770) hemF 3115594..3116511 (-) 918 WP_221068372.1 oxygen-dependent coproporphyrinogen oxidase -
  VA249_RS14415 (VYA_26780) - 3116546..3117103 (-) 558 WP_020196744.1 L-threonylcarbamoyladenylate synthase -
  VA249_RS14420 (VYA_26790) purE 3117304..3117789 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VA249_RS14425 (VYA_26800) - 3117794..3118927 (+) 1134 WP_221068373.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VA249_RS14430 (VYA_26810) - 3118992..3119561 (-) 570 WP_221068374.1 type I DNA topoisomerase -
  VA249_RS14435 (VYA_26820) - 3119584..3120063 (-) 480 WP_275946046.1 DUF494 family protein -
  VA249_RS14440 (VYA_26830) dprA 3120066..3121175 (-) 1110 WP_221068375.1 DNA-processing protein DprA Machinery gene
  VA249_RS14445 (VYA_26840) - 3121159..3122247 (-) 1089 WP_221068376.1 LysM peptidoglycan-binding domain-containing protein -
  VA249_RS14450 (VYA_26850) def 3122386..3122904 (+) 519 WP_221068377.1 peptide deformylase -
  VA249_RS14455 (VYA_26860) fmt 3122936..3123883 (+) 948 WP_221068378.1 methionyl-tRNA formyltransferase -
  VA249_RS14460 (VYA_26870) rsmB 3123966..3125249 (+) 1284 WP_221068379.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39572.30 Da        Isoelectric Point: 6.6060

>NTDB_id=83748 VA249_RS14440 WP_221068375.1 3120066..3121175(-) (dprA) [Vibrio alfacsensis strain 04Ya108]
MKIQNESDLAAWLKLTCLPGIGAVKLNKLLSKDSPSNIVQYSTSELQLLGFTDKQLQAWSMVDKEVDACLAWLASSSQHS
ILTLANPRYPPLLKQTVAPPPLLFVKGDASCLSLPQIAMVGSRNASVNGLQHARSFASELVQHDLIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLEQVYPARHRSLAQRVIESGALVSEFRPEAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPTSINAPNATGGNQLIRSGACLVQNTQEVLNEIQSLLNWSVSQSVDLFSTPMSEEELPFPQLFA
NVGNEATPVDILANRTNISVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=83748 VA249_RS14440 WP_221068375.1 3120066..3121175(-) (dprA) [Vibrio alfacsensis strain 04Ya108]
ATGAAAATACAAAATGAGAGTGACCTTGCTGCTTGGTTAAAACTAACGTGTTTACCGGGGATCGGCGCGGTAAAGCTGAA
TAAGTTGTTGAGTAAAGATTCGCCAAGCAATATCGTCCAGTATTCAACCTCTGAGCTGCAACTTTTAGGGTTTACCGACA
AGCAACTACAAGCGTGGTCTATGGTTGATAAAGAAGTGGATGCTTGTTTAGCTTGGTTAGCGTCATCTTCCCAGCATTCA
ATTCTTACCTTGGCTAACCCCCGGTATCCACCGCTATTAAAGCAAACGGTCGCTCCGCCTCCTTTGTTGTTTGTTAAAGG
TGATGCGAGCTGTTTATCCTTGCCACAAATCGCCATGGTTGGTAGTCGCAACGCCAGTGTGAATGGTTTGCAACATGCAC
GCAGTTTTGCTTCAGAACTCGTTCAGCATGATCTGATCGTGACCAGTGGATTGGCTTTAGGTATTGATGGTCATGCGCAT
GATGGAGCTTTGCAAGCCGGTGGTAAAACGATCGCAGTGCTAGGCTCAGGATTAGAGCAAGTGTATCCAGCAAGGCATCG
TAGTCTGGCGCAGCGGGTGATAGAAAGCGGTGCGTTAGTGTCGGAGTTTCGCCCGGAAGCAAAACCGAGAGCAGAAAACT
TTCCGCGTCGAAATCGAATTATAAGTGGCTTATCCTTAGGTGTTTTAGTTGTTGAAGCGGCAGAAAAAAGCGGCTCTTTG
ATAACGGCACGTTATGCCCTTGAGCAAGGGCGTGAAGTGTTTGCGTTGCCTACGTCAATCAATGCCCCGAATGCGACGGG
GGGTAATCAGTTGATTCGTAGTGGTGCCTGCCTCGTACAAAATACCCAAGAGGTGCTAAATGAAATACAATCTTTACTCA
ATTGGTCTGTTAGTCAGAGTGTAGATTTGTTTTCTACGCCAATGAGTGAAGAAGAATTGCCATTTCCTCAGCTGTTCGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATATCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(316-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

87.263

100

0.873
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

48.8

100

0.496
  dprA Legionella pneumophila strain ERS1305867

44.321

97.832

0.434
  dprA Haemophilus influenzae Rd KW20

44.51

91.328

0.407
  dprA Neisseria meningitidis strain C311

35.19

100

0.377
  dprA Neisseria meningitidis MC58

35.19

100

0.377
  dprA Acinetobacter baylyi ADP1

39.583

91.057

0.36

Multiple sequence alignment