Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH15_RS26025 Genome accession   NZ_CP126109
Coordinates   5077523..5078032 (-) Length   169 a.a.
NCBI ID   WP_283891711.1    Uniprot ID   -
Organism   Fictibacillus enclensis strain TL11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5072523..5083032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH15_RS26000 (QNH15_26000) rplI 5073023..5073466 (-) 444 WP_061973133.1 50S ribosomal protein L9 -
  QNH15_RS26005 (QNH15_26005) - 5073463..5075436 (-) 1974 WP_283891704.1 DHH family phosphoesterase -
  QNH15_RS26010 (QNH15_26010) - 5075448..5076395 (-) 948 WP_283891705.1 YybS family protein -
  QNH15_RS26015 (QNH15_26015) - 5076596..5077039 (+) 444 WP_283891707.1 YtoQ family protein -
  QNH15_RS26020 (QNH15_26020) rpsR 5077231..5077464 (-) 234 WP_053356327.1 30S ribosomal protein S18 -
  QNH15_RS26025 (QNH15_26025) ssbA 5077523..5078032 (-) 510 WP_283891711.1 single-stranded DNA-binding protein Machinery gene
  QNH15_RS26030 (QNH15_26030) rpsF 5078060..5078347 (-) 288 WP_061973123.1 30S ribosomal protein S6 -
  QNH15_RS26035 (QNH15_26035) ychF 5078539..5079636 (-) 1098 WP_129478637.1 redox-regulated ATPase YchF -
  QNH15_RS26040 (QNH15_26040) - 5079819..5080016 (-) 198 WP_061973117.1 DUF951 domain-containing protein -
  QNH15_RS26045 (QNH15_26045) - 5080092..5080892 (-) 801 WP_283895779.1 mechanosensitive ion channel family protein -
  QNH15_RS26050 (QNH15_26050) yyaC 5081279..5081920 (+) 642 WP_061973114.1 spore protease YyaC -
  QNH15_RS26055 (QNH15_26055) - 5081997..5082476 (-) 480 WP_283891716.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18678.45 Da        Isoelectric Point: 4.9222

>NTDB_id=836419 QNH15_RS26025 WP_283891711.1 5077523..5078032(-) (ssbA) [Fictibacillus enclensis strain TL11]
MLNRVILVGRLTKDPELRYTPSGVAVANFTLAVNRTFTNQQGEREADFINCVIWRKPAENVANFLKKGSLAGVDGRIQTR
SYDNNQGQRVYVTEVMAESVQFLEPKNANAGGGQQYQSQGGNNFGGPSGDRGYGQQQNQNQNQKRSNFNDDPFANDGTPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=836419 QNH15_RS26025 WP_283891711.1 5077523..5078032(-) (ssbA) [Fictibacillus enclensis strain TL11]
ATGCTAAATCGTGTAATCCTTGTTGGACGTTTAACGAAGGACCCGGAATTGCGCTATACCCCAAGCGGTGTGGCAGTTGC
AAACTTTACTTTGGCAGTAAATCGTACATTTACAAATCAGCAGGGTGAGCGCGAAGCAGATTTTATCAATTGTGTAATCT
GGCGTAAGCCGGCTGAAAATGTGGCCAACTTCTTGAAGAAGGGTTCACTTGCCGGAGTAGACGGACGCATCCAGACACGT
TCTTATGACAATAATCAGGGACAGCGTGTATACGTGACTGAGGTTATGGCTGAGAGTGTCCAGTTCCTTGAGCCGAAGAA
TGCGAATGCGGGCGGAGGACAACAGTACCAAAGCCAGGGCGGAAACAACTTTGGCGGGCCATCAGGTGACCGCGGTTATG
GACAGCAACAGAACCAAAACCAGAACCAAAAGCGCAGTAACTTTAATGATGACCCATTTGCCAACGATGGCACGCCGATC
GACATCTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.256

100

0.746
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.722

0.408
  ssb Vibrio cholerae strain A1552

35.754

100

0.379
  ssb Neisseria gonorrhoeae MS11

33.871

100

0.373
  ssb Neisseria meningitidis MC58

33.333

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.078

100

0.361