Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH24_RS06230 Genome accession   NZ_CP126101
Coordinates   1330469..1331731 (+) Length   420 a.a.
NCBI ID   WP_283871224.1    Uniprot ID   A0AAX3X1A0
Organism   Lysinibacillus pakistanensis strain LY1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1325469..1336731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH24_RS06200 (QNH24_06200) - 1325541..1326842 (+) 1302 WP_283871219.1 pitrilysin family protein -
  QNH24_RS06205 (QNH24_06205) - 1326839..1327567 (+) 729 WP_283871220.1 SDR family oxidoreductase -
  QNH24_RS06210 (QNH24_06210) - 1327612..1327869 (+) 258 WP_054770649.1 DUF3243 domain-containing protein -
  QNH24_RS06215 (QNH24_06215) - 1328094..1328882 (+) 789 WP_283871221.1 DUF3388 domain-containing protein -
  QNH24_RS06220 (QNH24_06220) - 1328908..1329825 (+) 918 WP_283871222.1 RodZ domain-containing protein -
  QNH24_RS06225 (QNH24_06225) pgsA 1329873..1330451 (+) 579 WP_283871223.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH24_RS06230 (QNH24_06230) cinA 1330469..1331731 (+) 1263 WP_283871224.1 competence/damage-inducible protein A Machinery gene
  QNH24_RS06235 (QNH24_06235) recA 1331887..1332951 (+) 1065 WP_283871225.1 recombinase RecA Machinery gene
  QNH24_RS06240 (QNH24_06240) rny 1333588..1335147 (+) 1560 WP_283871226.1 ribonuclease Y -
  QNH24_RS06245 (QNH24_06245) - 1335477..1336274 (+) 798 WP_283871227.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45292.81 Da        Isoelectric Point: 4.9705

>NTDB_id=835940 QNH24_RS06230 WP_283871224.1 1330469..1331731(+) (cinA) [Lysinibacillus pakistanensis strain LY1]
MNAEILAVGSELLLGQITNTNAKFISNQLSELGINVYYHTVVGDNAKRLEEAITIAESRADLIIFSGGLGPTKDDLTKET
IARHLDISLEFDDVALTYIEQFFAKRGRPMTENNRKQALVLAGCEVLANHHGMAPGMILTKGGRTYILLPGPPKELEPMF
QFEAKPKLGALLNAGGVIVSHVMRFYGIGEAELEVRVQAILDTQTNPTVAPLASDGEVTLRVTAKAETVQEAQQLIATKV
AEIQALVGEYQYGVDDDSLASKTVEMLLDNQLTISAAESLTAGLFQSELAEISGVGNALTGGVVTYTEEAKISQLGIPKQ
LLDTHGIVSSECAAAMASAVKQKFGTNIGIGLTGAAGPTAHDHQPVGTVWIGIAIDDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRYK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=835940 QNH24_RS06230 WP_283871224.1 1330469..1331731(+) (cinA) [Lysinibacillus pakistanensis strain LY1]
ATGAATGCTGAAATTCTTGCAGTTGGTTCAGAATTATTGCTAGGACAAATTACAAATACAAACGCGAAATTTATTTCTAA
TCAGCTGTCAGAGTTAGGGATAAATGTGTATTATCATACGGTTGTTGGGGATAATGCCAAACGTTTAGAGGAAGCTATAA
CAATTGCGGAGTCTCGTGCAGATTTAATCATATTTTCTGGTGGGCTTGGACCTACAAAGGATGATTTAACGAAGGAAACA
ATCGCACGTCATCTTGATATTTCGCTTGAATTTGATGATGTCGCCCTAACGTATATTGAGCAGTTTTTTGCTAAACGAGG
TCGTCCAATGACTGAAAATAATCGTAAACAGGCATTAGTATTAGCTGGTTGTGAAGTACTAGCAAACCATCATGGAATGG
CACCTGGCATGATACTAACAAAAGGTGGACGAACGTATATCTTGCTACCTGGGCCACCGAAAGAGCTTGAGCCAATGTTT
CAATTTGAGGCAAAGCCAAAGCTTGGTGCATTGTTAAATGCTGGAGGCGTTATTGTCTCTCACGTTATGCGCTTTTATGG
TATTGGGGAGGCAGAGCTGGAGGTTCGTGTTCAAGCTATTTTAGATACACAAACAAATCCTACTGTTGCACCGCTTGCCT
CAGATGGTGAAGTGACATTGCGTGTAACTGCTAAAGCAGAAACAGTACAGGAGGCACAGCAGCTTATTGCGACTAAGGTA
GCTGAGATTCAAGCACTTGTTGGCGAATATCAATACGGCGTAGATGACGATTCTCTTGCCTCTAAAACAGTAGAAATGTT
ACTTGATAATCAATTAACTATATCCGCTGCAGAAAGTTTAACTGCGGGGTTATTTCAATCAGAGCTGGCGGAAATTTCAG
GAGTAGGGAATGCGCTTACTGGTGGCGTTGTCACGTATACAGAAGAGGCAAAAATAAGTCAGCTTGGCATTCCTAAACAA
TTACTAGATACACATGGCATTGTCAGCAGTGAATGCGCTGCGGCTATGGCTAGTGCCGTAAAGCAAAAATTTGGTACAAA
TATTGGTATTGGCTTAACTGGGGCAGCAGGACCAACAGCACACGATCACCAACCAGTTGGAACAGTTTGGATTGGTATCG
CCATTGACGATGAAGAACCAATCACGTATTTACTTCATTTATCGGGTATGCGGAATACAAATCGACTTCGTGCAGTAAAG
TTTACATGTCATTATCTAATGCAGCTTTTGGAAGAAAGAGGATATACTAAACGCTATAAATAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.427

98.095

0.514
  cinA Streptococcus mitis SK321

45.596

91.905

0.419
  cinA Streptococcus pneumoniae Rx1

45.455

91.667

0.417
  cinA Streptococcus pneumoniae TIGR4

45.455

91.667

0.417
  cinA Streptococcus pneumoniae R6

45.455

91.667

0.417
  cinA Streptococcus mitis NCTC 12261

45.078

91.905

0.414
  cinA Streptococcus pneumoniae D39

45.195

91.667

0.414
  cinA Streptococcus mutans UA159

44.591

90.238

0.402