Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QNH45_RS14005 Genome accession   NZ_CP126099
Coordinates   2713840..2714421 (-) Length   193 a.a.
NCBI ID   WP_000991621.1    Uniprot ID   A0A4R4BLF5
Organism   Bacillus wiedmannii strain LN15     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2708840..2719421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS13975 (QNH45_13975) - 2709128..2709952 (-) 825 WP_283886312.1 PP2C family serine/threonine-protein phosphatase -
  QNH45_RS13980 (QNH45_13980) - 2710061..2710228 (-) 168 WP_140386776.1 septum formation initiator -
  QNH45_RS13985 (QNH45_13985) - 2710446..2710682 (+) 237 WP_283881133.1 hypothetical protein -
  QNH45_RS13990 (QNH45_13990) - 2710732..2711568 (-) 837 WP_283881134.1 proline/glycine betaine ABC transporter permease -
  QNH45_RS13995 (QNH45_13995) - 2711561..2712766 (-) 1206 WP_283881135.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  QNH45_RS14000 (QNH45_14000) - 2712938..2713795 (+) 858 WP_283881136.1 glycine betaine ABC transporter substrate-binding protein -
  QNH45_RS14005 (QNH45_14005) clpP 2713840..2714421 (-) 582 WP_000991621.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QNH45_RS14010 (QNH45_14010) - 2714443..2715129 (-) 687 WP_283881138.1 RNA polymerase subunit sigma-70 -
  QNH45_RS14015 (QNH45_14015) - 2715274..2715594 (+) 321 WP_046954108.1 2Fe-2S iron-sulfur cluster-binding protein -
  QNH45_RS14020 (QNH45_14020) rpiA 2715599..2716261 (+) 663 WP_283886313.1 ribose-5-phosphate isomerase RpiA -
  QNH45_RS14025 (QNH45_14025) - 2716368..2716802 (+) 435 WP_283881140.1 GNAT family N-acetyltransferase -
  QNH45_RS14030 (QNH45_14030) - 2716933..2718300 (-) 1368 WP_283881143.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21275.49 Da        Isoelectric Point: 4.9215

>NTDB_id=835828 QNH45_RS14005 WP_000991621.1 2713840..2714421(-) (clpP) [Bacillus wiedmannii strain LN15]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKRDINKMIAEKTGQ
SIERVAHDTERDYFMTAEEAKEYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=835828 QNH45_RS14005 WP_000991621.1 2713840..2714421(-) (clpP) [Bacillus wiedmannii strain LN15]
ATGAATGCAATTCCATATGTAGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCACGGCTATTAAAAGA
CCGCATTATTATTATTGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCGG
AAGATGCAGAGAAAGATATTTATTTATACATCAATAGCCCAGGTGGTTCAACGACAGCGGGTTTTGCCATATTAGATACG
ATGAATCTCATTAAACCAGATGTACAAACGCTATGCATGGGATTTGCCGCTTCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCGCTCCCTAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGCCAGGCAA
CAGAAATTGAAATAACAGCGAAAAGAATACTAAAGTTAAAGCGTGATATTAATAAAATGATTGCAGAAAAAACGGGGCAA
TCAATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCTGAAGAAGCGAAAGAATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R4BLF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.586

98.964

0.679
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.254

97.927

0.668
  clpP Streptococcus pneumoniae Rx1

56.771

99.482

0.565
  clpP Streptococcus pneumoniae D39

56.771

99.482

0.565
  clpP Streptococcus pneumoniae R6

56.771

99.482

0.565
  clpP Streptococcus pneumoniae TIGR4

56.771

99.482

0.565
  clpP Streptococcus thermophilus LMG 18311

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMD-9

55.729

99.482

0.554
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

97.927

0.508