Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH29_RS09350 Genome accession   NZ_CP126093
Coordinates   1894613..1895866 (+) Length   417 a.a.
NCBI ID   WP_283865577.1    Uniprot ID   A0AA95RNP5
Organism   Neobacillus sp. DY30     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1889613..1900866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS09320 (QNH29_09320) - 1889682..1890971 (+) 1290 WP_283864512.1 pitrilysin family protein -
  QNH29_RS09325 (QNH29_09325) - 1891029..1891751 (+) 723 WP_283864513.1 SDR family oxidoreductase -
  QNH29_RS09330 (QNH29_09330) - 1891830..1892087 (+) 258 WP_283864514.1 DUF3243 domain-containing protein -
  QNH29_RS09335 (QNH29_09335) - 1892250..1893041 (+) 792 WP_034676716.1 DUF3388 domain-containing protein -
  QNH29_RS09340 (QNH29_09340) - 1893063..1893965 (+) 903 WP_283864515.1 RodZ domain-containing protein -
  QNH29_RS09345 (QNH29_09345) pgsA 1894016..1894594 (+) 579 WP_283864516.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH29_RS09350 (QNH29_09350) cinA 1894613..1895866 (+) 1254 WP_283865577.1 competence/damage-inducible protein A Machinery gene
  QNH29_RS09355 (QNH29_09355) recA 1896399..1897439 (+) 1041 WP_283864517.1 recombinase RecA Machinery gene
  QNH29_RS09360 (QNH29_09360) rny 1897756..1899315 (+) 1560 WP_283864518.1 ribonuclease Y -
  QNH29_RS09365 (QNH29_09365) - 1899425..1900222 (+) 798 WP_283864519.1 TIGR00282 family metallophosphoesterase -
  QNH29_RS09370 (QNH29_09370) spoVS 1900393..1900653 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45443.37 Da        Isoelectric Point: 5.1176

>NTDB_id=835468 QNH29_RS09350 WP_283865577.1 1894613..1895866(+) (cinA) [Neobacillus sp. DY30]
MNAEIIAVGSELLLGQIVNSNARFISQQLAGLGINVFFHTVVGDNPDRLRSVIEIAEKRSNLIIFTGGLGPTKDDLTKET
IARHLGKNLVMEQEALESIELYFKKANRVMTENNKKQALVLEDSIILPNHHGMAPGMMVEKGNCIYMLLPGPPKEMEPMF
LRFGTAALSEQVKTDEKIVSRVLRFFGIGEAALETEILDLIEQQTNPTIAPLAADGECTLRITAKHQDLQKAETMLDEVE
DKIRARVGQFVYGYDNTSLVAELMNVLQANNLTISAAESLTGGLFQQELTGVPGVSSVLKGGVVCYTNEVKKNVLKVKPE
TIEKYGVVSQECAKELAENVATLVATDVGISFTGVAGPDELEGKPVGTVYIGISIKGKETVVVKLELGGSREANQIRSVK
YGCYHLIKQLQESQKAN

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=835468 QNH29_RS09350 WP_283865577.1 1894613..1895866(+) (cinA) [Neobacillus sp. DY30]
ATGAATGCAGAAATTATTGCAGTTGGTTCTGAATTACTGCTGGGTCAAATCGTTAATAGTAATGCACGATTTATTTCGCA
ACAACTCGCAGGACTAGGAATCAATGTTTTTTTCCATACGGTGGTTGGTGATAATCCTGACCGATTAAGGTCTGTAATTG
AAATTGCTGAAAAGCGTTCCAATTTGATCATTTTTACAGGCGGGCTGGGACCGACAAAAGATGATCTAACAAAGGAAACC
ATTGCACGGCATTTAGGTAAAAATCTAGTAATGGAACAAGAAGCATTAGAATCTATTGAACTTTATTTTAAGAAGGCAAA
TAGGGTAATGACGGAAAATAATAAGAAGCAGGCTCTTGTTTTAGAAGATTCTATTATCCTGCCAAACCATCATGGGATGG
CACCAGGAATGATGGTAGAGAAGGGTAACTGTATTTATATGCTTCTGCCAGGACCCCCGAAAGAAATGGAACCAATGTTT
TTACGCTTTGGTACGGCAGCTTTGTCGGAACAAGTAAAAACGGATGAGAAAATAGTTTCTAGAGTTTTAAGGTTCTTTGG
AATCGGAGAGGCTGCATTAGAAACGGAAATTTTGGATTTAATAGAACAGCAAACAAATCCAACAATTGCTCCGCTGGCTG
CGGATGGTGAATGTACATTACGGATTACCGCAAAGCATCAGGATTTGCAAAAGGCAGAGACTATGCTGGATGAAGTAGAG
GATAAAATTAGAGCTCGTGTAGGACAGTTTGTATATGGGTATGACAATACTTCGTTAGTAGCTGAACTTATGAACGTTTT
ACAAGCAAATAACTTAACGATCTCAGCGGCAGAGAGCTTAACAGGGGGATTATTTCAACAGGAATTAACGGGTGTTCCAG
GTGTTAGTTCAGTCCTGAAGGGCGGAGTCGTTTGCTACACGAATGAGGTTAAGAAGAATGTTTTAAAGGTTAAACCAGAA
ACGATTGAAAAATATGGGGTTGTAAGTCAAGAGTGTGCAAAAGAACTTGCCGAAAATGTTGCGACATTAGTAGCTACGGA
TGTTGGAATTAGTTTCACTGGTGTTGCCGGTCCTGATGAGCTTGAGGGAAAACCTGTAGGAACAGTTTACATTGGGATCT
CGATTAAAGGTAAAGAAACAGTCGTTGTAAAGCTGGAACTGGGCGGATCAAGAGAGGCAAACCAAATCCGTTCTGTAAAA
TATGGCTGTTACCATTTGATAAAGCAATTACAAGAATCACAGAAAGCTAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60

98.321

0.59
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.453
  cinA Streptococcus mutans UA159

44.524

100

0.448
  cinA Streptococcus pneumoniae Rx1

44.737

100

0.448
  cinA Streptococcus pneumoniae R6

44.737

100

0.448
  cinA Streptococcus mitis NCTC 12261

44.498

100

0.446
  cinA Streptococcus pneumoniae D39

44.498

100

0.446
  cinA Streptococcus mitis SK321

44.498

100

0.446