NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QNH18_RS19855	Genome accession	NZ_CP126091
Coordinates	3854523..3855095 (-)	Length	190 a.a.
NCBI ID	WP_105981266.1	Uniprot ID	-
Organism	Bacillus paralicheniformis strain CEW 1W
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3849523..3860095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH18_RS19835 (QNH18_19835)	-	3850411..3851709 (+)	1299	WP_023857118.1	hemolysin family protein	-
QNH18_RS19840 (QNH18_19840)	-	3851858..3853069 (+)	1212	WP_023857117.1	ammonium transporter	-
QNH18_RS19845 (QNH18_19845)	-	3853088..3853438 (+)	351	WP_003185936.1	P-II family nitrogen regulator	-
QNH18_RS19850 (QNH18_19850)	-	3853661..3854044 (+)	384	WP_103749405.1	hypothetical protein	-
QNH18_RS19855 (QNH18_19855)	clpP	3854523..3855095 (-)	573	WP_105981266.1	ATP-dependent Clp protease proteolytic subunit	Regulator
QNH18_RS19860 (QNH18_19860)	-	3855109..3855714 (-)	606	WP_219191903.1	RNA polymerase sigma factor	-
QNH18_RS19865 (QNH18_19865)	-	3855850..3856725 (-)	876	WP_023857113.1	M23 family metallopeptidase	-
QNH18_RS19870 (QNH18_19870)	-	3856919..3857416 (+)	498	WP_023857112.1	GNAT family N-acetyltransferase	-
QNH18_RS19875 (QNH18_19875)	-	3857467..3857910 (-)	444	WP_219191901.1	YwnF family protein	-
QNH18_RS19880 (QNH18_19880)	cls	3858158..3859606 (+)	1449	WP_023857110.1	cardiolipin synthase	-

Sequence

Protein

Download Length: 190 a.a. Molecular weight: 21074.24 Da Isoelectric Point: 5.3555

                                >NTDB_id=835390 QNH18_RS19855 WP_105981266.1 3854523..3855095(-) (clpP) [Bacillus paralicheniformis strain CEW 1W]

MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT

MDYVKPDVRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIEHFFHERTGQ

PIEKLKADMERDYFMDADEAKAYGIIDAVL

Nucleotide

Download Length: 573 bp

                                >NTDB_id=835390 QNH18_RS19855 WP_105981266.1 3854523..3855095(-) (clpP) [Bacillus paralicheniformis strain CEW 1W]

ATGAACACCATACCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA

CCGGATCATTATGATCGGCTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAGTTGCTGTTTTTGTCAGCCG

AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCGATTTTGGATACG

ATGGACTATGTGAAGCCGGATGTCCGCACGATCTGCGTCGGAATGGCAGCTTCCATGGGAGCGATTCTTCTCGCCGGCGG

AACAAAAGGCAAACGGTATGCGCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA

CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCACTTTTTTCACGAACGAACGGGCCAG

CCCATTGAAAAACTAAAAGCCGACATGGAACGTGATTATTTTATGGATGCGGACGAAGCGAAGGCATACGGGATTATTGA

TGCCGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	65.263	100	0.653
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.032	98.421	0.611
clpP	Streptococcus thermophilus LMG 18311	56.085	99.474	0.558
clpP	Streptococcus thermophilus LMD-9	56.085	99.474	0.558
clpP	Streptococcus pyogenes MGAS315	55.026	99.474	0.547
clpP	Streptococcus pyogenes JRS4	55.026	99.474	0.547
clpP	Streptococcus pneumoniae D39	55.026	99.474	0.547
clpP	Streptococcus pneumoniae R6	55.026	99.474	0.547
clpP	Streptococcus pneumoniae TIGR4	55.026	99.474	0.547
clpP	Streptococcus pneumoniae Rx1	55.026	99.474	0.547
clpP	Streptococcus mutans UA159	54.497	99.474	0.542
clpP	Lactococcus lactis subsp. cremoris KW2	52.91	99.474	0.526
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.852	99.474	0.516

Detailed information NTG0835390