Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH32_RS14015 Genome accession   NZ_CP126088
Coordinates   2661219..2662457 (-) Length   412 a.a.
NCBI ID   WP_253347593.1    Uniprot ID   -
Organism   Priestia flexa strain CCW CN82     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2656219..2667457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH32_RS13995 (QNH32_13995) spoVS 2656736..2656996 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  QNH32_RS14000 (QNH32_14000) - 2657231..2658028 (-) 798 WP_025908599.1 TIGR00282 family metallophosphoesterase -
  QNH32_RS14005 (QNH32_14005) rny 2658088..2659647 (-) 1560 WP_025908598.1 ribonuclease Y -
  QNH32_RS14010 (QNH32_14010) recA 2659929..2660966 (-) 1038 WP_025908597.1 recombinase RecA Machinery gene
  QNH32_RS14015 (QNH32_14015) cinA 2661219..2662457 (-) 1239 WP_253347593.1 competence/damage-inducible protein A Machinery gene
  QNH32_RS14020 (QNH32_14020) pgsA 2662471..2663055 (-) 585 WP_025908595.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH32_RS14025 (QNH32_14025) - 2663143..2664090 (-) 948 WP_225002363.1 helix-turn-helix domain-containing protein -
  QNH32_RS14030 (QNH32_14030) - 2664103..2664894 (-) 792 WP_035320247.1 DUF3388 domain-containing protein -
  QNH32_RS14035 (QNH32_14035) - 2665289..2665549 (-) 261 WP_061785726.1 DUF3243 domain-containing protein -
  QNH32_RS14040 (QNH32_14040) - 2665616..2666341 (-) 726 WP_061785725.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45002.26 Da        Isoelectric Point: 4.8140

>NTDB_id=835187 QNH32_RS14015 WP_253347593.1 2661219..2662457(-) (cinA) [Priestia flexa strain CCW CN82]
MNAEIIGVGSELLLGQIANTNAQYLSKKFAELGINVYYHTVVGDNESRLKEAILTAKKRADLIVFTGGLGPTKDDLTKET
IASELGVPLVTDQQALESIEAYFEKTNRTMTPNNRKQAIVLEGATILPNDYGMAPGMGITVHGIHYMLFPGPPKELYPMY
ESYGQAYLAEKLDMKEQIESRVLRFFGIGESQLETDIEDLLDAQTNPTIAPLAADGEVTLRLTAKHGDVVEAHRMLDEVE
KQIMSRVGEFFYGYDMTSLQAELIATMREQEVTVASAESLTGGLFSGTLTSIPGAGDVVKGSIVAYHTEVKHNVLHVAKE
TLEQDGAVSERCAEEMAVGVKKLTGSDVGISFTGVAGPSKQEGKEVGTVYIGIAFENEKTRVYSLKLTGSRDGIRKRTVN
YGIYYLLQLLKQ

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=835187 QNH32_RS14015 WP_253347593.1 2661219..2662457(-) (cinA) [Priestia flexa strain CCW CN82]
ATGAACGCGGAAATTATTGGAGTAGGTTCAGAGCTTTTGCTAGGCCAAATTGCCAATACAAACGCGCAATACCTATCTAA
AAAGTTTGCAGAGCTTGGTATTAACGTATATTATCATACGGTAGTTGGGGATAATGAAAGCCGATTGAAAGAAGCAATTT
TGACCGCCAAAAAACGTGCGGATTTGATTGTGTTTACAGGTGGGCTTGGGCCAACCAAAGATGACCTTACAAAAGAAACA
ATTGCTTCAGAACTAGGTGTCCCACTTGTAACAGATCAGCAAGCGCTTGAAAGTATCGAAGCGTATTTCGAAAAAACGAA
TCGGACAATGACGCCTAATAATAGGAAGCAAGCAATTGTACTTGAAGGTGCAACAATACTGCCAAACGATTATGGAATGG
CACCAGGAATGGGCATTACGGTGCATGGTATTCACTACATGTTATTTCCTGGTCCACCAAAGGAACTTTACCCTATGTAT
GAATCGTATGGACAAGCATATTTAGCAGAAAAGCTAGATATGAAAGAGCAAATTGAATCTCGCGTTTTACGTTTCTTTGG
AATTGGAGAGTCTCAGTTAGAAACAGATATTGAGGATTTATTAGATGCACAAACAAACCCAACCATTGCGCCGTTAGCTG
CTGATGGAGAAGTAACGCTTCGCTTAACGGCTAAGCATGGAGATGTGGTTGAGGCTCATCGAATGCTTGATGAAGTAGAA
AAGCAGATTATGAGCCGTGTAGGAGAGTTTTTCTACGGATACGATATGACATCTCTACAGGCTGAACTCATTGCTACAAT
GCGAGAGCAAGAAGTGACCGTTGCTTCAGCTGAAAGTTTAACTGGCGGATTGTTTAGTGGGACGCTAACGAGCATTCCTG
GAGCTGGAGATGTTGTAAAAGGTAGCATTGTTGCTTATCACACTGAGGTAAAGCACAATGTGCTACATGTAGCAAAAGAA
ACCCTAGAGCAAGACGGGGCAGTTAGCGAGAGATGCGCAGAAGAAATGGCTGTTGGTGTGAAAAAGCTGACAGGCTCTGA
TGTTGGTATTAGCTTTACAGGCGTCGCTGGTCCGTCTAAGCAAGAAGGTAAAGAAGTTGGTACAGTTTACATTGGTATAG
CTTTTGAAAATGAAAAAACACGCGTGTATTCGCTAAAGCTTACAGGCAGTCGTGATGGTATCCGTAAACGCACTGTGAAT
TATGGAATTTATTATCTTTTACAACTATTGAAACAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.463

99.515

0.612
  cinA Streptococcus mitis SK321

46.489

100

0.466
  cinA Streptococcus pneumoniae TIGR4

46.247

100

0.464
  cinA Streptococcus mitis NCTC 12261

46.247

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.763

100

0.459
  cinA Streptococcus pneumoniae R6

45.763

100

0.459
  cinA Streptococcus pneumoniae D39

45.521

100

0.456
  cinA Streptococcus mutans UA159

44.686

100

0.449