NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QNH35_RS17010	Genome accession	NZ_CP126081
Coordinates	3263070..3263666 (+)	Length	198 a.a.
NCBI ID	WP_003212962.1	Uniprot ID	A0A081LFM4
Organism	Bacillus pumilus strain B2_10
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3258070..3268666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH35_RS16990 (QNH35_16990)	abc-f	3258109..3259668 (-)	1560	WP_223252854.1	ribosomal protection-like ABC-F family protein	-
QNH35_RS16995 (QNH35_16995)	-	3260158..3261327 (-)	1170	WP_106067309.1	macrolide family glycosyltransferase	-
QNH35_RS17000 (QNH35_17000)	-	3261496..3262386 (-)	891	WP_268453913.1	ABC transporter substrate-binding protein	-
QNH35_RS17010 (QNH35_17010)	clpP	3263070..3263666 (+)	597	WP_003212962.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QNH35_RS17015 (QNH35_17015)	-	3263726..3264304 (-)	579	WP_283923962.1	TIGR00730 family Rossman fold protein	-
QNH35_RS17020 (QNH35_17020)	-	3264441..3264770 (+)	330	WP_113768112.1	MazG-like family protein	-
QNH35_RS17025 (QNH35_17025)	-	3264799..3266421 (-)	1623	WP_185107815.1	SulP family inorganic anion transporter	-
QNH35_RS17030 (QNH35_17030)	-	3266459..3267040 (-)	582	WP_065097977.1	carbonic anhydrase	-
QNH35_RS17035 (QNH35_17035)	-	3267592..3268569 (+)	978	WP_065097976.1	D-glycerate dehydrogenase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21816.00 Da Isoelectric Point: 4.6905

                                >NTDB_id=834780 QNH35_RS17010 WP_003212962.1 3263070..3263666(+) (clpP) [Bacillus pumilus strain B2_10]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNAEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=834780 QNH35_RS17010 WP_003212962.1 3263070..3263666(+) (clpP) [Bacillus pumilus strain B2_10]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG

AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG

ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG

CCAATCGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATGCAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A081LFM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	92.386	99.495	0.919
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.186	97.98	0.551
clpP	Streptococcus pneumoniae Rx1	55.67	97.98	0.545
clpP	Streptococcus pneumoniae D39	55.67	97.98	0.545
clpP	Streptococcus pneumoniae R6	55.67	97.98	0.545
clpP	Streptococcus pneumoniae TIGR4	55.67	97.98	0.545
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.124	97.98	0.53

Detailed information NTG0834780