NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QNK08_RS18095	Genome accession	NZ_CP125983
Coordinates	3370803..3371396 (+)	Length	197 a.a.
NCBI ID	WP_003228214.1	Uniprot ID	A0A199WEF2
Organism	Bacillus subtilis strain ZKY04
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3365803..3376396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNK08_RS18060 (QNK08_18085)	-	3366531..3366746 (+)	216	WP_033881551.1	helix-turn-helix domain-containing protein	-
QNK08_RS18065 (QNK08_18090)	-	3366948..3367283 (-)	336	WP_031601018.1	hypothetical protein	-
QNK08_RS18070 (QNK08_18095)	-	3367872..3368105 (+)	234	WP_033881293.1	helix-turn-helix domain-containing protein	-
QNK08_RS18075 (QNK08_18100)	-	3368165..3368347 (+)	183	WP_033881294.1	hypothetical protein	-
QNK08_RS18080 (QNK08_18105)	-	3368378..3369109 (-)	732	WP_264379465.1	helix-turn-helix domain-containing protein	-
QNK08_RS18085 (QNK08_18110)	-	3369268..3370257 (-)	990	WP_014480981.1	tyrosine-type recombinase/integrase	-
QNK08_RS18095 (QNK08_18120)	clpP	3370803..3371396 (+)	594	WP_003228214.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QNK08_RS18100 (QNK08_18125)	pgmB	3371459..3372133 (-)	675	WP_014480982.1	beta-phosphoglucomutase	-
QNK08_RS18105 (QNK08_18130)	malL	3372130..3373815 (-)	1686	WP_069964350.1	oligo-1,6-glucosidase	-
QNK08_RS18110 (QNK08_18135)	mdxK	3373808..3376081 (-)	2274	WP_069964351.1	maltose phosphorylase	-

Sequence

Protein

Download Length: 197 a.a. Molecular weight: 21682.00 Da Isoelectric Point: 4.9416

                                >NTDB_id=834090 QNK08_RS18095 WP_003228214.1 3370803..3371396(+) (clpP) [Bacillus subtilis strain ZKY04]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDKK

Nucleotide

Download Length: 594 bp

                                >NTDB_id=834090 QNK08_RS18095 WP_003228214.1 3370803..3371396(+) (clpP) [Bacillus subtilis strain ZKY04]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA

TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG

AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC

ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGCATGGCTGCGTCAATGGGCGCTTTCCTGCTTGCAGCCGG

CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCACTTGGCGGTGCGCAAGGTCAGGCGA

CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAACTAAACAAAGTCCTTGCTGAACGTACTGGCCAG

CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA

CAAAATTTTGACTCACACAGAAGACAAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A199WEF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	100	100	1
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.617	95.431	0.655
clpP	Streptococcus thermophilus LMG 18311	58.163	99.492	0.579
clpP	Streptococcus thermophilus LMD-9	58.163	99.492	0.579
clpP	Streptococcus pneumoniae D39	57.812	97.462	0.563
clpP	Streptococcus pneumoniae Rx1	57.812	97.462	0.563
clpP	Streptococcus pneumoniae R6	57.812	97.462	0.563
clpP	Streptococcus pneumoniae TIGR4	57.812	97.462	0.563
clpP	Lactococcus lactis subsp. cremoris KW2	57.895	96.447	0.558
clpP	Streptococcus pyogenes JRS4	56.122	99.492	0.558
clpP	Streptococcus pyogenes MGAS315	56.122	99.492	0.558
clpP	Streptococcus mutans UA159	54.822	100	0.548
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.789	96.447	0.538

Detailed information NTG0834090