NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	U0027_RS04685	Genome accession	NZ_CP139997
Coordinates	935286..935918 (+)	Length	210 a.a.
NCBI ID	WP_003521529.1	Uniprot ID	A0A822V5P2
Organism	Agrobacterium tumefaciens strain HAMBI 105
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 930286..940918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0027_RS04660 (U0027_04660)	-	930703..931044 (+)	342	WP_003502345.1	cupin domain-containing protein	-
U0027_RS04665 (U0027_04665)	-	931065..931379 (-)	315	WP_060724092.1	ArsR/SmtB family transcription factor	-
U0027_RS04670 (U0027_04670)	-	931469..932239 (+)	771	WP_162266694.1	SDR family NAD(P)-dependent oxidoreductase	-
U0027_RS04675 (U0027_04675)	-	932260..933513 (-)	1254	WP_060726153.1	cytochrome P450	-
U0027_RS04680 (U0027_04680)	-	933586..934833 (-)	1248	WP_060726154.1	sensor domain-containing diguanylate cyclase	-
U0027_RS04685 (U0027_04685)	clpP	935286..935918 (+)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
U0027_RS04690 (U0027_04690)	clpX	936212..937489 (+)	1278	WP_114835634.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
U0027_RS04695 (U0027_04695)	lon	937904..940321 (+)	2418	WP_003502358.1	endopeptidase La	-
U0027_RS04700 (U0027_04700)	hupB	940611..940886 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

Download Length: 210 a.a. Molecular weight: 23254.80 Da Isoelectric Point: 6.1201

                                >NTDB_id=832918 U0027_RS04685 WP_003521529.1 935286..935918(+) (clpP) [Agrobacterium tumefaciens strain HAMBI 105]

MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT

AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE

VYVKHTGRTLEEVEKTLDRDHFMDADEAKDWGVIDKILTSRQEIEGAAAN

Nucleotide

Download Length: 633 bp

                                >NTDB_id=832918 U0027_RS04685 WP_003521529.1 935286..935918(+) (clpP) [Agrobacterium tumefaciens strain HAMBI 105]

ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTAGAGCAGACCAATCGCGGCGAACGCTCCTACGA

CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGTCCGGTGGAAGACCAGATGGCGTCGCTCGTCTGCG

CGCAGCTTCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATCGCGCTCTACATCAATTCGCCGGGTGGCGTCGTGACC

GCCGGCATGGCGATCTACGATACGATGCAGTTCATCCGCCCTGCGGTTTCCACGCTCTGCGTCGGTCAGGCCGCGTCCAT

GGGCTCGCTGCTTCTGGCTGCCGGGGAAAAGGGAATGCGCTTCGCGACCCCGAACGCCCGCATCATGGTTCACCAGCCGT

CGGGCGGTTTCCAGGGTCAGGCATCGGATATCGAGCGCCATGCCCGTGACATCATCAAGATGAAGCGTCGCCTGAATGAA

GTCTACGTGAAGCATACCGGCCGCACGCTCGAAGAGGTTGAAAAAACCCTTGATCGCGACCATTTCATGGATGCAGACGA

GGCGAAGGACTGGGGCGTGATCGACAAGATCCTGACCTCGCGCCAGGAAATCGAAGGCGCCGCCGCGAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A822V5P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	60	92.857	0.557
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.915	89.524	0.51
clpP	Lactococcus lactis subsp. cremoris KW2	52.105	90.476	0.471
clpP	Streptococcus mutans UA159	49.231	92.857	0.457
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.526	90.476	0.457
clpP	Streptococcus pyogenes JRS4	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMG 18311	48.454	92.381	0.448
clpP	Streptococcus thermophilus LMD-9	48.454	92.381	0.448
clpP	Streptococcus pneumoniae Rx1	48.705	91.905	0.448
clpP	Streptococcus pneumoniae D39	48.705	91.905	0.448
clpP	Streptococcus pneumoniae R6	48.705	91.905	0.448
clpP	Streptococcus pneumoniae TIGR4	48.705	91.905	0.448

Detailed information NTG0832918