Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QMY17_RS00255 Genome accession   NZ_CP125812
Coordinates   48748..49266 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain N3378-3At     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 43748..54266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS00235 yyzM 44822..45028 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  QMY17_RS00240 yyaE 45079..47082 (+) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  QMY17_RS00245 ychF 47209..48309 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  QMY17_RS00250 rpsF 48420..48707 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  QMY17_RS00255 ssbA 48748..49266 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  QMY17_RS00260 rpsR 49310..49549 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  QMY17_RS00265 xth 49614..50372 (+) 759 WP_014481508.1 exodeoxyribonuclease III -
  QMY17_RS00270 - 50432..50821 (+) 390 Protein_43 LacI family DNA-binding transcriptional regulator -
  QMY17_RS00275 - 51726..53000 (-) 1275 WP_014481505.1 MFS transporter -
  QMY17_RS00280 - 52978..54006 (-) 1029 WP_014481504.1 AAA family ATPase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=832906 QMY17_RS00255 WP_003219228.1 48748..49266(+) (ssbA) [Bacillus subtilis strain N3378-3At]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=832906 QMY17_RS00255 WP_003219228.1 48748..49266(+) (ssbA) [Bacillus subtilis strain N3378-3At]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378