Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QFW87_RS02040 Genome accession   NZ_CP125618
Coordinates   440701..442788 (+) Length   695 a.a.
NCBI ID   WP_283182626.1    Uniprot ID   -
Organism   Pseudomonas sp. PMCC200344     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435701..447788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS02020 comM 437913..438977 (+) 1065 WP_283189693.1 pilus assembly protein PilM Machinery gene
  QFW87_RS02025 - 438977..439543 (+) 567 WP_283189694.1 PilN domain-containing protein -
  QFW87_RS02030 pilO 439540..440163 (+) 624 WP_283182624.1 type 4a pilus biogenesis protein PilO -
  QFW87_RS02035 - 440160..440687 (+) 528 WP_283182625.1 pilus assembly protein PilP -
  QFW87_RS02040 pilQ 440701..442788 (+) 2088 WP_283182626.1 type IV pilus secretin PilQ Machinery gene
  QFW87_RS02045 aroK 442793..443311 (+) 519 WP_010464421.1 shikimate kinase AroK -
  QFW87_RS02050 aroB 443463..444563 (+) 1101 WP_111449365.1 3-dehydroquinate synthase -
  QFW87_RS02055 - 444574..446172 (+) 1599 WP_283182627.1 AAA family ATPase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 75245.54 Da        Isoelectric Point: 6.1100

>NTDB_id=831910 QFW87_RS02040 WP_283182626.1 440701..442788(+) (pilQ) [Pseudomonas sp. PMCC200344]
MNRIFSTFGISLWIALLSPMVLAANLKALDVAALPGDRIELKLSFDGPPPPPHGYTTESPARIALDLPGVVSQLKSKNRD
LGGGNARSATVVQAKDRTRLIINLTQLTPYNARVEGNTLFVVVGQGANKTASSPAPKTPRAATATPAPAKAYAPVGKAIR
GVDFQRGTQGEGNVVIDLSDPSIAPDIQERDGRIILGFAKTQLPEPLRVRLDVKDFATPVQFVNASATGDRATISIEPSG
AFDYSTYQTDNKLTVSIRPMTVDDLQKRNTERFAYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEISARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSLQNKGNWNTSGVS
NGANASSTIGTPGSTSTNSPFVDLGTAANTSGLGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTE
IPYQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGV
FSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=831910 QFW87_RS02040 WP_283182626.1 440701..442788(+) (pilQ) [Pseudomonas sp. PMCC200344]
ATGAACAGGATTTTCTCAACCTTCGGTATTTCGCTATGGATAGCGTTGCTGTCGCCGATGGTACTAGCGGCCAACCTCAA
AGCGCTGGATGTCGCCGCGCTACCGGGGGACCGCATCGAGTTGAAGTTGTCGTTCGATGGGCCGCCACCGCCGCCCCATG
GTTACACCACCGAATCGCCTGCACGAATTGCGCTGGATCTGCCTGGTGTCGTTAGTCAGCTAAAAAGCAAAAATCGTGAC
CTGGGCGGCGGAAATGCCCGCAGCGCCACGGTGGTGCAAGCCAAGGACCGTACGCGGCTGATCATCAATCTGACCCAGTT
GACGCCGTATAACGCACGGGTCGAAGGCAATACTCTGTTCGTGGTGGTCGGCCAAGGCGCCAACAAAACGGCCTCCAGCC
CAGCGCCCAAAACGCCGCGCGCAGCCACTGCAACGCCAGCCCCGGCGAAAGCCTATGCGCCGGTAGGCAAGGCCATTCGG
GGTGTGGATTTCCAGCGCGGTACTCAGGGCGAAGGCAATGTGGTCATCGATCTGTCGGATCCCTCCATCGCCCCAGACAT
TCAGGAGCGCGACGGCAGGATCATCCTCGGTTTCGCCAAGACCCAGTTGCCTGAGCCGTTGCGTGTCCGTCTGGACGTCA
AGGATTTCGCCACGCCGGTGCAGTTCGTCAACGCCAGTGCCACGGGTGATCGGGCCACGATCAGCATTGAGCCCAGCGGC
GCATTCGATTATTCGACTTACCAGACTGACAACAAGCTGACCGTCAGCATCCGGCCAATGACGGTCGATGACTTGCAGAA
ACGCAACACCGAACGCTTCGCCTACACCGGTGAAAAACTCTCGCTGAATTTCCAAGACATCGATGTGCGTTCGGTGCTGC
AACTGATCGCCGATTTTACCAACCTGAATCTGGTGGCCAGCGACACGGTGCAGGGCGGCATCACGCTGCGTTTGCAGAAC
GTGCCGTGGGATCAGGCGCTGGATCTGGTGTTGAAAACCAAGGGCCTGGATAAACGCAAGATCGGTAACGTTTTGCTGGT
GGCGCCAGCCGATGAGATTTCCGCCCGCGAGCGTCAGGAGCTGGAGTCGCAGAAGCAGATTGCCGACCTGGCTCCCTTGC
GTCGCGAGCTGTTGCAGGTCAACTACGCCAAAGCTGCCGATATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGAGGCG
AAAGTCGACGAGCGGGGCTCGATCACGGTGGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGA
CGAACTGCGCCGTATCGTCGCGCAACTGGATATCCCGGTGCGTCAGGTGATGATCGAGGCGCGCATCGTCGAAGCCAACG
TCGACTATGATAAAAGCCTCGGCGTGCGCTGGGGCGGTTCGTTGCAGAACAAAGGCAACTGGAACACCTCAGGTGTCAGC
AACGGGGCGAATGCTTCATCGACCATAGGTACGCCTGGCAGCACCAGCACCAACTCGCCGTTCGTCGACCTAGGCACCGC
CGCCAACACCTCGGGGCTCGGCATCGCCTTCATCACCGACAATGTGCTGCTGGATCTCGAGCTGACGGCCATGGAGAAGA
CCGGCAACGGCGAAATTGTCTCGCAGCCCAAGGTGGTCACCTCGGACAAGGAAACCGCGAAAATCCTCAAGGGCACGGAG
ATTCCCTACCAGGAAGCCAGCTCCAGCGGTGCGACCTCGGTGTCGTTCAAAGAGGCCTCGCTGTCTCTGGAGGTGACGCC
GCAGATCACTCCGGACAACCGGATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAGGTGCAGG
ATGTGCCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTCCTGGTCAACGACGGCGAGACCATCGTGATTGGCGGGGTT
TTCTCAAATACTCAGAGCAAGGTTGTAGATAAGGTGCCATTTCTCGGTGATGTGCCGTATCTTGGCCGCCTTTTCCGGCG
TGACGTGGTTTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGA
GTCATTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

Bacterial type II and III secretion system protein (Secretin)

(530-686)

AMIN domain (AMIN)

(37-121)

Secretin and TonB N terminus short domain (STN)

(303-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.007

100

0.751
  comQ Acinetobacter baylyi ADP1

40.463

100

0.427
  pilQ Acinetobacter baumannii strain A118

38.064

100

0.413
  pilQ Acinetobacter baumannii D1279779

38.064

100

0.413
  pilQ Legionella pneumophila strain ERS1305867

37.758

97.554

0.368
  pilQ Legionella pneumophila strain Lp02

37.758

97.554

0.368