Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QFW87_RS02020 Genome accession   NZ_CP125618
Coordinates   437913..438977 (+) Length   354 a.a.
NCBI ID   WP_283189693.1    Uniprot ID   -
Organism   Pseudomonas sp. PMCC200344     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432913..443977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS02010 - 433716..434984 (+) 1269 WP_283182620.1 malic enzyme-like NAD(P)-binding protein -
  QFW87_RS02015 - 435253..437697 (-) 2445 WP_283182621.1 penicillin-binding protein 1A -
  QFW87_RS02020 comM 437913..438977 (+) 1065 WP_283189693.1 pilus assembly protein PilM Machinery gene
  QFW87_RS02025 - 438977..439543 (+) 567 WP_283189694.1 PilN domain-containing protein -
  QFW87_RS02030 pilO 439540..440163 (+) 624 WP_283182624.1 type 4a pilus biogenesis protein PilO -
  QFW87_RS02035 - 440160..440687 (+) 528 WP_283182625.1 pilus assembly protein PilP -
  QFW87_RS02040 pilQ 440701..442788 (+) 2088 WP_283182626.1 type IV pilus secretin PilQ Machinery gene
  QFW87_RS02045 aroK 442793..443311 (+) 519 WP_010464421.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38261.74 Da        Isoelectric Point: 4.7373

>NTDB_id=831909 QFW87_RS02020 WP_283189693.1 437913..438977(+) (comM) [Pseudomonas sp. PMCC200344]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPTNAVVEKNIAELEGVGQALARVLLKARTNLKNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSVRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSYGLLASQLAASQERLTVAVVDIGATMTTLSVLHQGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVNEVLQPFRDALVQQVSRSLQFFFASGQYNSVDHILLAGGTASVPGLDRLIEQRLGTPTQVANP
FSDMTLSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=831909 QFW87_RS02020 WP_283189693.1 437913..438977(+) (comM) [Pseudomonas sp. PMCC200344]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTCAAGCTTCTGGAGCT
AAGCCGCCAAGGCGACCGTTATCGGGTCGAGGCCTATGCGGTGGAACCTTTACCCACCAACGCGGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGCGTAGGGCAGGCACTCGCGCGCGTGCTGCTCAAGGCCAGAACCAACCTCAAGAACGTCGCCGTG
GCCGTGGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGTCTTTCCGACGACGAAATGGAAAACCAGCT
GAAGATCGAGGCCGATCAATACATCCCTTATCCATTGGATGAAGTGGCCATCGACTTTGAGGTCCAGGGCGTTTCTGTGC
GCAACCCCGAGCGAGTCAATGTGCTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTCCGGGAAGCGGCCCTGGCCCTG
GCCGGTCTGACAGCCCGCGTGGTCGACGTCGAGGCCTATGCGCTGGAGCGTTCCTACGGATTGCTGGCGAGCCAACTGGC
TGCTTCTCAGGAGCGTCTGACGGTAGCGGTGGTCGATATCGGCGCAACCATGACCACCCTGAGCGTGCTGCACCAGGGGC
GGATCATCTACACTCGCGAGCAATTGTTCGGCGGTCGTCAACTGACGGAGGAAATCCAGCGACGTTATGGCCTGACCCTT
GAGCAGGCAGGGCTGGCGAAGAAGCAGGGTGGTTTGCCGGACGATTACGTCAATGAGGTGTTGCAGCCGTTTCGCGATGC
GCTGGTGCAGCAGGTGTCGCGTTCGTTGCAGTTTTTCTTCGCCTCCGGTCAGTACAACTCGGTCGACCACATTCTGTTGG
CCGGCGGTACCGCATCGGTCCCGGGGCTGGACCGGTTGATCGAGCAACGATTGGGTACGCCGACGCAGGTGGCTAACCCA
TTCTCCGACATGACCCTGAGCAGCAAGGTCAACGCCGGTGCCTTGGCCAGCGATGCGCCGGCACTGATGATCGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

57.062

100

0.571
  pilM Acinetobacter baumannii D1279779

56.78

100

0.568
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

48.588

100

0.486