Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QMK51_RS26285 Genome accession   NZ_CP125375
Coordinates   5833945..5836011 (-) Length   688 a.a.
NCBI ID   WP_320392492.1    Uniprot ID   -
Organism   Pseudomonas sp. P9_31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5828945..5841011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK51_RS26270 (QMK51_26260) - 5830577..5832160 (-) 1584 WP_320392491.1 AAA family ATPase -
  QMK51_RS26275 (QMK51_26265) aroB 5832171..5833271 (-) 1101 WP_258697929.1 3-dehydroquinate synthase -
  QMK51_RS26280 (QMK51_26270) aroK 5833422..5833940 (-) 519 WP_258697930.1 shikimate kinase AroK -
  QMK51_RS26285 (QMK51_26275) pilQ 5833945..5836011 (-) 2067 WP_320392492.1 type IV pilus secretin PilQ Machinery gene
  QMK51_RS26290 (QMK51_26280) - 5836025..5836552 (-) 528 WP_320392493.1 pilus assembly protein PilP -
  QMK51_RS26295 (QMK51_26285) pilO 5836549..5837172 (-) 624 WP_320392494.1 type 4a pilus biogenesis protein PilO -
  QMK51_RS26300 (QMK51_26290) - 5837169..5837735 (-) 567 WP_320392495.1 PilN domain-containing protein -
  QMK51_RS26305 (QMK51_26295) comM 5837735..5838799 (-) 1065 WP_320392496.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 74415.64 Da        Isoelectric Point: 6.3632

>NTDB_id=831551 QMK51_RS26285 WP_320392492.1 5833945..5836011(-) (pilQ) [Pseudomonas sp. P9_31]
MNRIFSTFGISLWIAFLSPMVQAANLKTLDVAALPGDRVELKLSFDGPPPQPQGYTTEQPARIALDLPGVTSQLANKNRD
LGGGNARSATVVEAKNRTRLIISLTQLTPYNARVEGNNLFVVVGQGGGSKAPKPITSAPRTATATPAPARVNAPVGKAIR
GVDFQRGTQGEGNVVIDLSDPSIAPDIQEHDGKIIVGFTKTQLPERLRVRLDVKDFATPVQFVNASATGDRAIISIEPSG
AFDYSTYQTDNKLTISVRPMTVDDLHKRNAERFAYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KIDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEASVDYDKQLGVRWGGSKTGGNWTGSGGAS
PGNPITGQSTSQPFVDLGATSATSGIGISFITDNTLLDLELSAMEKTGNGEIVSQPKVVTADKETAKILKGTEIPYPESS
SSGATSVTFKPAVLSLEVTPQITPDNRIIMEVKVTKDQPDYANLVLGQPPINKNEVNAKVLINDGETIVIGGVFSNTQSK
VVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=831551 QMK51_RS26285 WP_320392492.1 5833945..5836011(-) (pilQ) [Pseudomonas sp. P9_31]
ATGAACAGGATTTTCTCAACCTTCGGTATTTCGCTATGGATAGCGTTTCTGTCGCCGATGGTACAGGCGGCCAACCTCAA
AACGCTGGATGTCGCCGCGCTGCCCGGTGATCGCGTCGAGTTGAAGTTGTCGTTCGATGGGCCGCCGCCGCAGCCCCAGG
GTTATACGACAGAGCAGCCTGCGCGGATTGCGCTGGATCTGCCGGGGGTCACCAGTCAGCTGGCGAACAAGAATCGAGAC
CTGGGCGGCGGCAACGCCCGCAGCGCCACGGTGGTGGAGGCCAAGAACCGCACACGGCTGATCATCAGCCTGACCCAGTT
AACCCCGTATAACGCACGCGTCGAAGGCAACAATCTTTTCGTGGTCGTCGGGCAGGGGGGAGGTAGCAAGGCGCCTAAAC
CGATCACCAGCGCGCCGCGCACAGCCACTGCGACGCCAGCGCCCGCCAGGGTCAATGCCCCCGTGGGCAAAGCCATCCGG
GGCGTGGATTTCCAACGCGGCACCCAGGGTGAAGGCAATGTGGTTATCGATCTGTCGGATCCGTCCATCGCCCCGGACAT
CCAGGAGCACGATGGCAAGATCATCGTCGGTTTCACCAAGACTCAACTGCCTGAACGGTTGCGCGTGCGCCTCGACGTCA
AGGATTTCGCCACTCCAGTGCAGTTCGTCAACGCCAGTGCCACGGGCGATCGGGCCATTATCAGCATCGAACCCAGCGGC
GCCTTTGATTATTCGACCTATCAAACCGATAACAAATTGACGATCAGCGTCCGGCCGATGACGGTCGACGACTTGCACAA
GCGCAACGCCGAACGCTTTGCCTACAGCGGTGAAAAACTCTCGCTGAACTTCCAGGACATCGATGTGCGCTCGGTGCTGC
AACTGATCGCCGATTTCACCAACCTCAATCTGGTGGCCAGTGACACGGTGCAGGGCGGCATCACGTTGCGCCTGCAGAAT
GTGCCGTGGGATCAGGCGCTGGATCTGGTGTTGAAAACCAAAGGCCTGGATAAGCGCAAGATCGGAAACGTGCTGCTGGT
GGCGCCGGCCGATGAAATTGCCGCCCGGGAGCGTCAGGAGCTGGAGTCGCAGAAGCAGATCGCCGAACTGGCGCCTCTGC
GTCGCGAACTGTTGCAGGTCAACTACGCCAAGGCCGCCGATATTGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGAGGCG
AAAATAGACGAGCGCGGTTCAATCACGGTCGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGA
TGAACTGCGCCGCATCGTGGCGCAGCTGGATATTCCGGTGCGTCAGGTAATGATCGAGGCGCGCATCGTCGAAGCTAGCG
TTGATTATGACAAGCAGTTGGGCGTGCGATGGGGTGGAAGCAAGACCGGTGGTAATTGGACAGGGTCGGGCGGTGCTTCT
CCCGGCAACCCCATTACAGGGCAAAGCACCAGCCAACCCTTTGTTGATCTGGGCGCTACAAGTGCCACGTCCGGGATCGG
CATTTCCTTTATCACTGACAACACGCTGCTGGACCTCGAGTTGAGCGCCATGGAAAAAACCGGCAATGGCGAAATTGTTT
CGCAACCCAAGGTGGTCACGGCTGATAAGGAAACCGCGAAGATCCTGAAAGGTACTGAAATTCCGTATCCGGAATCCAGT
TCCAGCGGCGCGACGTCGGTGACGTTCAAGCCGGCAGTCCTTTCGCTGGAGGTGACCCCGCAGATCACCCCGGACAATCG
CATTATCATGGAGGTCAAGGTCACCAAGGATCAGCCGGACTACGCTAACCTGGTCCTTGGGCAGCCGCCGATCAACAAAA
ACGAAGTCAACGCCAAGGTCCTGATCAACGACGGCGAGACCATCGTCATTGGTGGGGTTTTCTCAAATACTCAGAGCAAG
GTTGTAGATAAGGTGCCATTTCTCGGTGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTCGGAGAAAAA
ATCCGAGCTGCTGGTCTTTCTCACACCGCGTATCATGAACAATCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(523-679)

Secretin and TonB N terminus short domain (STN)

(303-349)

AMIN domain (AMIN)

(37-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.989

100

0.747
  comQ Acinetobacter baylyi ADP1

41.128

100

0.435
  pilQ Acinetobacter baumannii strain A118

39.015

100

0.426
  pilQ Acinetobacter baumannii D1279779

39.015

100

0.426
  pilQ Legionella pneumophila strain ERS1305867

38.484

97.82

0.376
  pilQ Legionella pneumophila strain Lp02

38.336

97.82

0.375