Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QMK51_RS26305 Genome accession   NZ_CP125375
Coordinates   5837735..5838799 (-) Length   354 a.a.
NCBI ID   WP_320392496.1    Uniprot ID   -
Organism   Pseudomonas sp. P9_31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5832735..5843799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK51_RS26280 (QMK51_26270) aroK 5833422..5833940 (-) 519 WP_258697930.1 shikimate kinase AroK -
  QMK51_RS26285 (QMK51_26275) pilQ 5833945..5836011 (-) 2067 WP_320392492.1 type IV pilus secretin PilQ Machinery gene
  QMK51_RS26290 (QMK51_26280) - 5836025..5836552 (-) 528 WP_320392493.1 pilus assembly protein PilP -
  QMK51_RS26295 (QMK51_26285) pilO 5836549..5837172 (-) 624 WP_320392494.1 type 4a pilus biogenesis protein PilO -
  QMK51_RS26300 (QMK51_26290) - 5837169..5837735 (-) 567 WP_320392495.1 PilN domain-containing protein -
  QMK51_RS26305 (QMK51_26295) comM 5837735..5838799 (-) 1065 WP_320392496.1 pilus assembly protein PilM Machinery gene
  QMK51_RS26310 (QMK51_26300) - 5839018..5841456 (+) 2439 WP_413817547.1 penicillin-binding protein 1A -
  QMK51_RS26315 (QMK51_26305) - 5841716..5842984 (-) 1269 WP_258697937.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38152.61 Da        Isoelectric Point: 4.7417

>NTDB_id=831552 QMK51_RS26305 WP_320392496.1 5837735..5838799(-) (comM) [Pseudomonas sp. P9_31]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPTSAVVEKNIAELEGVGQALARVLVKARTSLRNVAV
AVAGSAVITKIIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGVSARNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFSLLATQLAASQERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNSVDHILLAGGTASVSGLDRLIEQRLGTPTQVANP
FSDMTLGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=831552 QMK51_RS26305 WP_320392496.1 5837735..5838799(-) (comM) [Pseudomonas sp. P9_31]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTTCTGGAGCT
AAGTCGCCAGGGGGACCGCTACCGGGTCGAGGCCTATGCGGTCGAGCCGCTGCCCACCAGTGCCGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGTGTGGGGCAGGCCCTTGCGCGCGTGCTGGTCAAGGCCAGAACCAGCCTCAGGAACGTCGCCGTG
GCGGTCGCCGGCTCGGCGGTGATCACCAAGATCATCGAGATGGACGCCGGTCTTTCCGACGACGAGATGGAAAACCAGCT
GAAGATCGAGGCCGATCAGTACATCCCTTATCCACTGGACGAAGTGGCGATCGATTTCGAAGTGCAGGGCGTGTCGGCGC
GCAACCCCGAGCGGGTCAATGTGCTACTGGCCGCCTGTCGCAAGGAAAACGTCGAGGTTCGTGAAGCGGCTTTGGCCCTG
GCCGGGTTGACCGCGCGCGTGGTCGATGTCGAAGCCTATGCCCTGGAGCGATCGTTCAGCCTGTTGGCAACCCAGCTGGC
CGCCTCTCAGGAGCGTCTGACCGTGGCGGTGGTCGATATCGGCGCGACCATGACCACCCTGAGCGTGCTGCACAATGGGC
GAATCATCTACACCCGTGAACAATTGTTCGGCGGCCGTCAACTGACGGAAGAAATCCAGCGCCGTTATGGCCTGACGGTC
GAGCAGGCGGGGCTGGCGAAGAAGCAGGGTGGTTTGCCGGACGATTACGTCAGCGAGGTCTTGCAGCCGTTTCGTGAGGC
GTTGGTGCAACAGGTGTCGCGTTCGTTGCAGTTTTTCTTTGCCTCCGGCCAATACAACTCGGTCGATCACATCCTTCTGG
CCGGCGGCACCGCCTCGGTCTCCGGGCTGGATCGGTTGATCGAGCAGCGCCTGGGTACGCCGACCCAGGTCGCCAATCCA
TTCTCCGACATGACCCTGGGCAGCAAGGTCAACGCCGGTGCCCTGGCCAGTGATGCCCCGGCGCTGATGATCGCCTGTGG
GCTGGCCCTCAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

55.085

100

0.551
  pilM Legionella pneumophila strain ERS1305867

48.588

100

0.486