Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   R8559_RS06010 Genome accession   NZ_AP026926
Coordinates   1160839..1161303 (-) Length   154 a.a.
NCBI ID   WP_001135767.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700119     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155839..1166303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8559_RS05990 (PC0116_11790) - 1156790..1157758 (-) 969 WP_000105363.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  R8559_RS05995 (PC0116_11800) pdrM 1157912..1159273 (-) 1362 WP_000278537.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  R8559_RS06000 (PC0116_11810) - 1159284..1159544 (-) 261 WP_001105925.1 hypothetical protein -
  R8559_RS06005 (PC0116_11820) - 1159558..1160826 (-) 1269 WP_000924488.1 dihydroorotase -
  R8559_RS06010 (PC0116_11830) mutX 1160839..1161303 (-) 465 WP_001135767.1 8-oxo-dGTP diphosphatase Machinery gene
  R8559_RS06015 (PC0116_11840) - 1161313..1161966 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  R8559_RS06020 (PC0116_11850) - 1162104..1162751 (-) 648 WP_001809355.1 hypothetical protein -
  R8559_RS06025 (PC0116_11860) - 1162765..1163478 (-) 714 WP_000499437.1 YjjG family noncanonical pyrimidine nucleotidase -
  R8559_RS06030 (PC0116_11870) - 1163968..1164075 (-) 108 Protein_1195 hypothetical protein -
  R8559_RS06035 - 1164075..1164149 (-) 75 Protein_1196 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17826.19 Da        Isoelectric Point: 4.2287

>NTDB_id=82800 R8559_RS06010 WP_001135767.1 1160839..1161303(-) (mutX) [Streptococcus pneumoniae strain PZ900700119]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWIPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=82800 R8559_RS06010 WP_001135767.1 1160839..1161303(-) (mutX) [Streptococcus pneumoniae strain PZ900700119]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGATTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981

Multiple sequence alignment