Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R8559_RS05965 Genome accession   NZ_AP026926
Coordinates   1150584..1151654 (+) Length   356 a.a.
NCBI ID   WP_000817882.1    Uniprot ID   Q7ZAK7
Organism   Streptococcus pneumoniae strain PZ900700119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145584..1156654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8559_RS05950 (PC0116_11710) ylqF 1146834..1147685 (+) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  R8559_RS05955 (PC0116_11720) - 1147672..1148451 (+) 780 WP_000201131.1 ribonuclease HII -
  R8559_RS05960 (PC0116_11730) - 1148467..1150017 (+) 1551 WP_000392538.1 ClC family H(+)/Cl(-) exchange transporter -
  R8559_RS05965 (PC0116_11740) xerS 1150584..1151654 (+) 1071 WP_000817882.1 tyrosine recombinase XerS Machinery gene
  R8559_RS05970 (PC0116_11750) - 1151719..1152708 (-) 990 WP_000873984.1 lipoate--protein ligase -
  R8559_RS05975 (PC0116_11760) lpdA 1152772..1154475 (-) 1704 WP_001162937.1 dihydrolipoyl dehydrogenase -
  R8559_RS05980 (PC0116_11770) - 1154521..1155564 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41171.21 Da        Isoelectric Point: 9.6220

>NTDB_id=82799 R8559_RS05965 WP_000817882.1 1150584..1151654(+) (xerS) [Streptococcus pneumoniae strain PZ900700119]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=82799 R8559_RS05965 WP_000817882.1 1150584..1151654(+) (xerS) [Streptococcus pneumoniae strain PZ900700119]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAATATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTACGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTGGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7ZAK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

100

100

1

Multiple sequence alignment