Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QI003_RS20730 Genome accession   NZ_CP124601
Coordinates   4106561..4107151 (+) Length   196 a.a.
NCBI ID   WP_014665471.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4101561..4112151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS20700 (QI003_20700) aspP 4102540..4104102 (+) 1563 WP_282373596.1 aspartate/proton symporter AspP -
  QI003_RS20705 (QI003_20705) - 4104198..4104782 (+) 585 WP_148343214.1 TetR family transcriptional regulator -
  QI003_RS20710 (QI003_20710) - 4104864..4105199 (+) 336 WP_134975076.1 SMR family transporter -
  QI003_RS20715 (QI003_20715) - 4105199..4105519 (+) 321 WP_069150367.1 multidrug efflux SMR transporter -
  QI003_RS20720 (QI003_20720) - 4105555..4106067 (-) 513 WP_282373600.1 DUF3231 family protein -
  QI003_RS20730 (QI003_20730) clpP 4106561..4107151 (+) 591 WP_014665471.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QI003_RS20735 (QI003_20735) pgmB 4107197..4107871 (-) 675 WP_148343220.1 beta-phosphoglucomutase -
  QI003_RS20740 (QI003_20740) malL 4107868..4109553 (-) 1686 WP_282373602.1 oligo-1,6-glucosidase -
  QI003_RS20745 (QI003_20745) - 4109546..4111819 (-) 2274 WP_282373604.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21553.82 Da        Isoelectric Point: 4.8025

>NTDB_id=826650 QI003_RS20730 WP_014665471.1 4106561..4107151(+) (clpP) [Bacillus stercoris strain BS21]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=826650 QI003_RS20730 WP_014665471.1 4106561..4107151(+) (clpP) [Bacillus stercoris strain BS21]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG
AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAACCGAAAGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCCTGCTTGCAGCCGG
TGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAAGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTAATCGAACGCGACACAGACCGTGATAACTTCAAATCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATTTTGACTCACACAGAAGACAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

100

100

1
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.617

95.918

0.658
  clpP Streptococcus thermophilus LMG 18311

58.163

100

0.582
  clpP Streptococcus thermophilus LMD-9

58.163

100

0.582
  clpP Streptococcus pneumoniae D39

57.812

97.959

0.566
  clpP Streptococcus pneumoniae Rx1

57.812

97.959

0.566
  clpP Streptococcus pneumoniae R6

57.812

97.959

0.566
  clpP Streptococcus pneumoniae TIGR4

57.812

97.959

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.895

96.939

0.561
  clpP Streptococcus pyogenes JRS4

56.122

100

0.561
  clpP Streptococcus pyogenes MGAS315

56.122

100

0.561
  clpP Streptococcus mutans UA159

54.822

100

0.551
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.789

96.939

0.541