Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   K9V56_RS21900 Genome accession   NZ_CP124551
Coordinates   5186485..5188014 (+) Length   509 a.a.
NCBI ID   WP_171827226.1    Uniprot ID   -
Organism   Kinneretia aquatilis strain DH15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5181485..5193014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9V56_RS21875 (K9V56_021875) - 5182501..5183262 (+) 762 WP_171827222.1 SPOR domain-containing protein -
  K9V56_RS21880 (K9V56_021880) - 5183324..5184016 (+) 693 WP_285805950.1 thiol:disulfide interchange protein DsbA/DsbL -
  K9V56_RS21885 (K9V56_021885) - 5184082..5184756 (+) 675 WP_171827223.1 thiol:disulfide interchange protein DsbA/DsbL -
  K9V56_RS21890 (K9V56_021890) lptA 5184945..5185583 (+) 639 WP_171827224.1 lipopolysaccharide transport periplasmic protein LptA -
  K9V56_RS21895 (K9V56_021895) lptB 5185580..5186386 (+) 807 WP_171827225.1 LPS export ABC transporter ATP-binding protein -
  K9V56_RS21900 (K9V56_021900) rpoN/rpoN1 5186485..5188014 (+) 1530 WP_171827226.1 RNA polymerase factor sigma-54 Machinery gene
  K9V56_RS21905 (K9V56_021905) - 5188201..5189214 (+) 1014 WP_171827227.1 SGNH/GDSL hydrolase family protein -
  K9V56_RS21910 (K9V56_021910) - 5189277..5190353 (-) 1077 WP_171827228.1 pre-peptidase C-terminal domain-containing protein -
  K9V56_RS21915 (K9V56_021915) - 5190747..5192030 (+) 1284 WP_171827229.1 class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 56086.34 Da        Isoelectric Point: 4.5851

>NTDB_id=826439 K9V56_RS21900 WP_171827226.1 5186485..5188014(+) (rpoN/rpoN1) [Kinneretia aquatilis strain DH15]
MKQSLQVRLSQHLALTPQLQQSIRLLQLSTLELNQEVEQMLAQNPLLETEEDFSVATPELPELRPASAAEDSGADRELGG
GAEAEATPELQAEDFGSTEREDWENGTEGDDFDGIRELPSNNGSGSGSNDEDGERSDQESAEISLQEHLVQQMAGMHLSD
TDQLALRLLIDSLNEDGYLEDSLEAIAEALVPDGDEDSAAEREELLDHLRIALKWLHHMDPPGVGARELTECLELQLRQL
PRSAPQVIAIMICKKHLDLLAKRDSRRLMLLTGADDALLREAQALIVALEPKPGRRFARGQAPAVIPDVIVRKVGRELRV
IINPEVAPKLRINELYANALRQTRGGISNSALGGQLQEARWFIKNIQQRFDTILRVSTAIVERQKGFFSHGAVAMKPLVL
REIADELGLHESTISRVTTAKYMATPFGTFELKYFFGSGLSTEAGGEASSTAVRELIKQFIAAENPAKPLSDSALASMLE
EQGIQVARRTVAKYREGMHIGTTTMRRVV

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=826439 K9V56_RS21900 WP_171827226.1 5186485..5188014(+) (rpoN/rpoN1) [Kinneretia aquatilis strain DH15]
ATGAAGCAGTCACTCCAGGTTCGACTGAGCCAGCATCTGGCCTTGACGCCGCAGCTGCAGCAATCGATCCGCCTGCTGCA
ACTGTCCACGCTGGAGCTGAATCAGGAAGTCGAGCAGATGCTGGCGCAGAACCCGCTGCTCGAAACCGAAGAAGACTTCT
CCGTCGCCACGCCCGAGCTGCCCGAGCTGCGCCCGGCCAGTGCCGCCGAGGACAGCGGCGCCGACCGTGAGCTGGGCGGC
GGCGCCGAGGCCGAGGCCACGCCCGAGCTGCAGGCCGAAGACTTCGGCAGCACCGAACGCGAGGACTGGGAGAACGGCAC
CGAGGGCGACGATTTCGACGGCATCCGCGAACTGCCCAGCAACAACGGCAGCGGCTCGGGCAGCAACGATGAAGACGGCG
AACGCAGCGACCAGGAATCGGCCGAGATCAGCCTGCAAGAGCATCTGGTCCAGCAGATGGCCGGCATGCACCTCAGCGAT
ACCGACCAGCTGGCGCTGCGCCTGCTGATCGATTCGCTCAACGAGGACGGCTATCTCGAGGACAGCCTGGAAGCCATCGC
CGAGGCCCTGGTGCCGGACGGCGACGAGGACAGCGCCGCCGAGCGCGAGGAGCTGCTCGACCACCTGCGCATCGCCCTCA
AGTGGCTGCACCACATGGACCCGCCCGGCGTCGGTGCCCGCGAACTGACGGAATGCCTGGAGCTGCAGCTGCGCCAGCTG
CCGCGCAGCGCGCCGCAGGTGATCGCCATCATGATCTGCAAAAAGCACTTGGACCTGCTGGCCAAGCGCGACAGCCGCCG
CCTGATGCTGCTGACCGGCGCCGACGATGCCTTGCTGCGTGAGGCGCAAGCCCTGATCGTGGCCCTGGAGCCCAAGCCCG
GCCGGCGCTTTGCCCGCGGCCAGGCACCGGCCGTGATCCCGGACGTGATCGTGCGCAAGGTCGGGCGCGAGCTGCGCGTC
ATCATCAACCCCGAGGTCGCGCCCAAGCTGCGCATCAACGAGCTCTACGCCAACGCCCTGCGCCAGACGCGCGGCGGCAT
CAGCAACAGCGCCCTGGGTGGCCAGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCC
TGCGCGTCTCCACCGCCATCGTCGAACGGCAAAAAGGTTTCTTCAGCCACGGCGCCGTGGCCATGAAGCCCCTGGTGCTG
CGCGAGATCGCCGACGAGCTGGGCCTGCACGAATCGACCATCTCGCGCGTGACCACGGCCAAGTACATGGCCACGCCCTT
CGGCACCTTCGAGCTCAAGTATTTCTTCGGCTCGGGCCTGTCCACCGAGGCCGGCGGCGAGGCCTCCAGCACCGCTGTGC
GTGAGCTGATCAAGCAGTTCATCGCCGCCGAGAACCCGGCCAAACCCCTGTCCGACAGCGCCCTGGCCAGCATGCTGGAA
GAGCAAGGCATCCAGGTCGCACGCCGCACCGTCGCCAAATACCGCGAAGGCATGCACATCGGGACGACGACGATGCGGCG
GGTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-336)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(354-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.81

100

0.534