Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QHF92_RS17980 Genome accession   NZ_CP123994
Coordinates   3526404..3527000 (+) Length   198 a.a.
NCBI ID   WP_003219849.1    Uniprot ID   A0A9W5LL57
Organism   Bacillus inaquosorum strain M3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3521404..3532000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS17950 (QHF92_17950) aspP 3522377..3523939 (+) 1563 WP_060399548.1 aspartate/proton symporter AspP -
  QHF92_RS17955 (QHF92_17955) - 3524034..3524618 (+) 585 WP_060399549.1 TetR family transcriptional regulator -
  QHF92_RS17960 (QHF92_17960) - 3524700..3525035 (+) 336 WP_060399550.1 multidrug efflux SMR transporter -
  QHF92_RS17965 (QHF92_17965) - 3525035..3525349 (+) 315 WP_019259545.1 multidrug efflux SMR transporter -
  QHF92_RS17970 (QHF92_17970) - 3525391..3525903 (-) 513 WP_019259546.1 DUF3231 family protein -
  QHF92_RS17980 (QHF92_17980) clpP 3526404..3527000 (+) 597 WP_003219849.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QHF92_RS17985 (QHF92_17985) pgmB 3527073..3527747 (-) 675 WP_060399551.1 beta-phosphoglucomutase -
  QHF92_RS17990 (QHF92_17990) - 3527744..3529429 (-) 1686 WP_060399552.1 alpha-glucosidase -
  QHF92_RS17995 (QHF92_17995) - 3529422..3531695 (-) 2274 WP_060399553.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21873.14 Da        Isoelectric Point: 4.7114

>NTDB_id=823752 QHF92_RS17980 WP_003219849.1 3526404..3527000(+) (clpP) [Bacillus inaquosorum strain M3]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=823752 QHF92_RS17980 WP_003219849.1 3526404..3527000(+) (clpP) [Bacillus inaquosorum strain M3]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGCGCATTCCTGCTTGCTGCCGG
CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCACAAGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATCCTGACTCGCAATACAGAAGAACAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

96.465

100

0.965
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae Rx1

57.732

97.98

0.566
  clpP Streptococcus pneumoniae D39

57.732

97.98

0.566
  clpP Streptococcus pneumoniae R6

57.732

97.98

0.566
  clpP Streptococcus pneumoniae TIGR4

57.732

97.98

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Streptococcus mutans UA159

55.155

97.98

0.54
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54