Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QE150_RS02300 Genome accession   NZ_CP123993
Coordinates   314932..317097 (+) Length   721 a.a.
NCBI ID   WP_270901096.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309932..322097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02280 (QE150_02280) pilM 311895..312953 (+) 1059 WP_270901098.1 pilus assembly protein PilM Machinery gene
  QE150_RS02285 (QE150_02285) pilN 312953..313594 (+) 642 WP_270901097.1 PilN domain-containing protein Machinery gene
  QE150_RS02290 (QE150_02290) pilO 313591..314331 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  QE150_RS02295 (QE150_02295) pilP 314342..314869 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QE150_RS02300 (QE150_02300) pilQ 314932..317097 (+) 2166 WP_270901096.1 type IV pilus secretin PilQ Machinery gene
  QE150_RS02305 (QE150_02305) aroK 317109..317678 (+) 570 WP_000643712.1 shikimate kinase AroK -
  QE150_RS02310 (QE150_02310) aroB 317707..318789 (+) 1083 WP_270901095.1 3-dehydroquinate synthase -
  QE150_RS02315 (QE150_02315) - 318805..319680 (+) 876 WP_000218801.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77919.38 Da        Isoelectric Point: 6.9044

>NTDB_id=823643 QE150_RS02300 WP_270901096.1 314932..317097(+) (pilQ) [Acinetobacter baumannii strain Ab4294]
MNHVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRIMFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKI
SVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGVGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNKNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=823643 QE150_RS02300 WP_270901096.1 314932..317097(+) (pilQ) [Acinetobacter baumannii strain Ab4294]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAATCATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATACTTGATTTTGATAAGGCTCAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCAAGTTCTGTAGATGTTACTTCAGATGACCAGCGTTCACGTTTAACTGTAAATCTAAAAGA
TGCTGGAGCATTTACAACACGAGTCGAAGGTAATACCTTTATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGTCTCAGCTCAACCACAAGGTGTTTCAAATATTGGCTTTCAACGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
GTAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAGGGTAGTAAAGTCGTTATAAGAACAATAGGTACAAA
AATCCCGACACATTTAGCACGTCGCTTAAATGTAAATGATTTTGCAACCCCGGTTTCAAGTATTGATGCTTATAATGATA
AAGGGGTTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTATCAGGCAGAGAATAAGCTCACGATC
AGTTTGAAACGTCCCCAAGATAAAAATGTTACCTCTTTATATAAAACGCCAAATTATTCAGGAAATAAACTTTCATTAGA
CTTCCAAGATATTGAAGTACGCCGTGTGTTGCAATTACTTGCTGATTTTACAGGCATCAATATGGTAGCTGCCGATAGTG
TACAAGGTAATATCACACTACGTTTAAAAGATGTACCTTGGGATCAGGCTCTTGATATTATTTTAAAAACTAAAAATCTT
GATAAACGCCGTAATGGCAATGTGATTTGGATTGCTCCAGTTGCAGAATTGATTAAGGCGGAAGAAGAAGAAGCGAAAGC
TGTTGCACAAAGTGTCAAACTTGCACCCTTACAGACTGAGTATATTCAACTGAAGTATGCTAAAGCTGGCGATATTATGG
GTCTCATTACACAAGGCTCAAATAATAGTAATGGTTTACAGCATACTTCTGGTGGAGGGACTTCAACTTCAACCAATTTA
AATACTGGAGTTGATAGTCTAGGCAATAATGTGGGTAGTTTGCTTAGCCCACGTGGCACTATTACCCAAGATGACCGAAC
TAATACTCTTATTATTAATGATACTGCTCAGTCAATTGATCAAATTCGTAAAATGATTGACTTGCTTGATGTGCAAGTTA
AACAAGTTATGGTTGAAGCACGTATTGTGAGAGCTTCTACGTCATTTACGAAAGAGCTTGGGGTGAAGTGGGGTATTCTT
TCACAAGGTATTACCAATAATAAAAACTTATTGGTTGGCGGTAGTGAAACAACTTTATGGAATTTACGCGAACCTAAAAA
AGATGAAACTACAGGTGGGTATAAATATACGATTGAGCGCCCAGATAACTTAAACGTGGATTTAGGAGTTTCTAATCCTG
CAGGAAGTATTGCTTTTGGCTTGATTAGTATGTCTGACTTTATGTTAGATCTTGAATTGTCTGCTTTACAAGCGGATGGT
TATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCCGATAAACAAACAGCGAAAGTTGCAACTGGTCAACAAGTTCC
ATATCAATCTACAACTAACTCTGCAGCAGGTTCAACTGCTACAACATCTTTTAAAGATGCTTTGCTGAGTTTAAATGTGA
CACCAAGTATTACACCTGATGGCAAGATTCAAATGAAGTTGGATATTTCTAAGGATTCTGTAGCGGGTGCGGCTCCAAAT
GGAGAGTTGATTTTAAATAAAAATAATATCAACACCAATGTATTGGTAGATAATGGCGAAACTGTCATTTTGGGTGGTGT
TTTTGAGCAAACGACTATGAATTCACAAACCAAAGTTCCTTTCTTTGGTGATATTCCTGTTGTTGGGCGTTTATTTAGAA
AAGATGTAAAGTCTGATGATAAACAAGAGTTGCTGATTTTCGTTACACCACGAATTGTTAATGACACTTTAGCGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(555-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

99.723

100

0.997
  pilQ Acinetobacter baumannii strain A118

99.584

100

0.996
  comQ Acinetobacter baylyi ADP1

75.242

100

0.755
  pilQ Pseudomonas aeruginosa PAK

40.42

99.168

0.401