Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QE150_RS02285 Genome accession   NZ_CP123993
Coordinates   312953..313594 (+) Length   213 a.a.
NCBI ID   WP_270901097.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307953..318594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02265 (QE150_02265) - 308001..308333 (+) 333 WP_000169602.1 hypothetical protein -
  QE150_RS02270 (QE150_02270) - 308336..309160 (+) 825 WP_270901099.1 putative RNA methyltransferase -
  QE150_RS02275 (QE150_02275) ponA 309178..311733 (-) 2556 WP_078209215.1 penicillin-binding protein PBP1a -
  QE150_RS02280 (QE150_02280) pilM 311895..312953 (+) 1059 WP_270901098.1 pilus assembly protein PilM Machinery gene
  QE150_RS02285 (QE150_02285) pilN 312953..313594 (+) 642 WP_270901097.1 PilN domain-containing protein Machinery gene
  QE150_RS02290 (QE150_02290) pilO 313591..314331 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  QE150_RS02295 (QE150_02295) pilP 314342..314869 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QE150_RS02300 (QE150_02300) pilQ 314932..317097 (+) 2166 WP_270901096.1 type IV pilus secretin PilQ Machinery gene
  QE150_RS02305 (QE150_02305) aroK 317109..317678 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24001.33 Da        Isoelectric Point: 5.1246

>NTDB_id=823640 QE150_RS02285 WP_270901097.1 312953..313594(+) (pilN) [Acinetobacter baumannii strain Ab4294]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVQVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKTASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=823640 QE150_RS02285 WP_270901097.1 312953..313594(+) (pilN) [Acinetobacter baumannii strain Ab4294]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCA
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGACTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.122

100

0.981
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704