Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QE150_RS02295 Genome accession   NZ_CP123993
Coordinates   314342..314869 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309342..319869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02280 (QE150_02280) pilM 311895..312953 (+) 1059 WP_270901098.1 pilus assembly protein PilM Machinery gene
  QE150_RS02285 (QE150_02285) pilN 312953..313594 (+) 642 WP_270901097.1 PilN domain-containing protein Machinery gene
  QE150_RS02290 (QE150_02290) pilO 313591..314331 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  QE150_RS02295 (QE150_02295) pilP 314342..314869 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QE150_RS02300 (QE150_02300) pilQ 314932..317097 (+) 2166 WP_270901096.1 type IV pilus secretin PilQ Machinery gene
  QE150_RS02305 (QE150_02305) aroK 317109..317678 (+) 570 WP_000643712.1 shikimate kinase AroK -
  QE150_RS02310 (QE150_02310) aroB 317707..318789 (+) 1083 WP_270901095.1 3-dehydroquinate synthase -
  QE150_RS02315 (QE150_02315) - 318805..319680 (+) 876 WP_000218801.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=823642 QE150_RS02295 WP_000695065.1 314342..314869(+) (pilP) [Acinetobacter baumannii strain Ab4294]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=823642 QE150_RS02295 WP_000695065.1 314342..314869(+) (pilP) [Acinetobacter baumannii strain Ab4294]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714