Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OU418_RS06120 Genome accession   NZ_CP123621
Coordinates   1188168..1189319 (+) Length   383 a.a.
NCBI ID   WP_041850978.1    Uniprot ID   -
Organism   Bacillus subtilis strain RLI2019     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1183168..1194319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS06085 (OU418_06085) yjbB 1183840..1185057 (+) 1218 WP_080332593.1 MFS transporter -
  OU418_RS06090 (OU418_06090) yjbC 1185221..1185799 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  OU418_RS06095 (OU418_06095) spx 1185980..1186375 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  OU418_RS06100 (OU418_06100) yjbE 1186418..1187074 (-) 657 WP_041850979.1 TerC family protein -
  OU418_RS06105 (OU418_06105) - 1187244..1187384 (+) 141 WP_119122854.1 hypothetical protein -
  OU418_RS06110 (OU418_06110) mecA 1187351..1188007 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  OU418_RS06115 (OU418_06115) - 1188002..1188124 (-) 123 WP_003245684.1 hypothetical protein -
  OU418_RS06120 (OU418_06120) coiA 1188168..1189319 (+) 1152 WP_041850978.1 competence protein CoiA Machinery gene
  OU418_RS06125 (OU418_06125) pepF 1189549..1191378 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  OU418_RS06130 (OU418_06130) - 1191416..1191583 (-) 168 WP_003244944.1 hypothetical protein -
  OU418_RS06135 (OU418_06135) spxH 1191898..1192797 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  OU418_RS06140 (OU418_06140) bhbI 1192794..1193192 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  OU418_RS06145 (OU418_06145) cwlQ 1193447..1194181 (-) 735 WP_041850976.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 44920.02 Da        Isoelectric Point: 9.9417

>NTDB_id=821746 OU418_RS06120 WP_041850978.1 1188168..1189319(+) (coiA) [Bacillus subtilis strain RLI2019]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTESFKQEGIIPQWIMGYSRLKRTASSFYQLSTF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=821746 OU418_RS06120 WP_041850978.1 1188168..1189319(+) (coiA) [Bacillus subtilis strain RLI2019]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGAGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACACAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGAGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAACTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATTCATCGGGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAACGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAAGGATTTCTTTATTTGTTTA
TGACGGATCTTGGAGATAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.928

97.389

0.963