Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   R5026_RS18935 Genome accession   NZ_CP137495
Coordinates   3946220..3946861 (-) Length   213 a.a.
NCBI ID   WP_003087922.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA0875     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3941220..3951861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5026_RS18920 (R5026_18920) hupB 3941899..3942171 (-) 273 WP_003087931.1 nucleoid-associated protein HU-beta -
  R5026_RS18925 (R5026_18925) lon 3942307..3944703 (-) 2397 WP_003087926.1 endopeptidase La -
  R5026_RS18930 (R5026_18930) clpX 3944835..3946115 (-) 1281 WP_003087924.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  R5026_RS18935 (R5026_18935) clpP 3946220..3946861 (-) 642 WP_003087922.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  R5026_RS18940 (R5026_18940) tig 3946955..3948265 (-) 1311 WP_003087920.1 trigger factor -
  R5026_RS18945 (R5026_18945) parR 3948497..3949204 (+) 708 WP_003087915.1 response regulator transcription factor ParR -
  R5026_RS18950 (R5026_18950) parS 3949205..3950491 (+) 1287 WP_003087912.1 sensor histidine kinase ParS -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23601.27 Da        Isoelectric Point: 6.6019

>NTDB_id=821094 R5026_RS18935 WP_003087922.1 3946220..3946861(-) (clpP) [Pseudomonas aeruginosa strain HPA0875]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQILAHHTRQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=821094 R5026_RS18935 WP_003087922.1 3946220..3946861(-) (clpP) [Pseudomonas aeruginosa strain HPA0875]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC
AACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC
CTGTATCGGTCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCCGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG
TGACCGCTTTATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT
AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.188

90.141

0.606
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.789

89.202

0.587
  clpP Lactococcus lactis subsp. cremoris KW2

53.299

92.488

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.777

92.488

0.479
  clpP Streptococcus mutans UA159

50

92.019

0.46
  clpP Streptococcus pneumoniae R6

50.256

91.549

0.46
  clpP Streptococcus pneumoniae TIGR4

50.256

91.549

0.46
  clpP Streptococcus pyogenes JRS4

50.256

91.549

0.46
  clpP Streptococcus pyogenes MGAS315

50.256

91.549

0.46
  clpP Streptococcus thermophilus LMG 18311

50.256

91.549

0.46
  clpP Streptococcus thermophilus LMD-9

50.256

91.549

0.46
  clpP Streptococcus pneumoniae Rx1

50.256

91.549

0.46
  clpP Streptococcus pneumoniae D39

50.256

91.549

0.46