Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QEP67_RS01655 Genome accession   NZ_CP123058
Coordinates   349524..350105 (-) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus cereus group sp. MS39     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 344524..355105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS01630 (QEP67_01630) - 345489..345947 (+) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  QEP67_RS01635 (QEP67_01635) rapZ 345968..346849 (+) 882 WP_000138461.1 RNase adapter RapZ -
  QEP67_RS01640 (QEP67_01640) - 346853..347806 (+) 954 WP_000712182.1 YvcK family protein -
  QEP67_RS01645 (QEP67_01645) whiA 347896..348846 (+) 951 WP_000006569.1 DNA-binding protein WhiA -
  QEP67_RS01650 (QEP67_01650) - 348870..349118 (+) 249 WP_000250305.1 HPr family phosphocarrier protein -
  QEP67_RS01655 (QEP67_01655) clpP 349524..350105 (-) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  QEP67_RS01660 (QEP67_01660) - 350346..351215 (-) 870 WP_000018900.1 DUF421 domain-containing protein -
  QEP67_RS01665 (QEP67_01665) - 351236..351442 (-) 207 WP_353706507.1 DUF1657 domain-containing protein -
  QEP67_RS01670 (QEP67_01670) spoVAE 351454..351804 (-) 351 WP_000575918.1 stage V sporulation protein AE -
  QEP67_RS01675 (QEP67_01675) spoVAD 351801..352817 (-) 1017 WP_000938954.1 stage V sporulation protein AD -
  QEP67_RS01680 (QEP67_01680) spoVAC 352818..353294 (-) 477 WP_000095409.1 stage V sporulation protein AC -
  QEP67_RS01685 (QEP67_01685) - 353323..353811 (-) 489 WP_001228530.1 YhcN/YlaJ family sporulation lipoprotein -
  QEP67_RS01690 (QEP67_01690) - 353905..354111 (-) 207 WP_000216160.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=818025 QEP67_RS01655 WP_001049163.1 349524..350105(-) (clpP) [Bacillus cereus group sp. MS39]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=818025 QEP67_RS01655 WP_001049163.1 349524..350105(-) (clpP) [Bacillus cereus group sp. MS39]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAATAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAATTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATTGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCTGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554