Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QBD03_RS07525 Genome accession   NZ_CP122959
Coordinates   1514725..1515615 (-) Length   296 a.a.
NCBI ID   WP_280102664.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1509725..1520615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS07490 (QBD03_07490) - 1510131..1510565 (+) 435 WP_280102658.1 ImmA/IrrE family metallo-endopeptidase -
  QBD03_RS07495 (QBD03_07495) - 1510644..1511033 (+) 390 WP_280102659.1 hypothetical protein -
  QBD03_RS07500 (QBD03_07500) - 1511129..1511659 (+) 531 WP_280102660.1 Ltp family lipoprotein -
  QBD03_RS07510 (QBD03_07510) - 1511822..1512133 (+) 312 WP_280102661.1 hypothetical protein -
  QBD03_RS07515 (QBD03_07515) - 1512248..1513672 (+) 1425 WP_280102662.1 recombinase family protein -
  QBD03_RS07520 (QBD03_07520) comGB 1513725..1514732 (-) 1008 WP_280102663.1 type II secretion system F family protein Machinery gene
  QBD03_RS07525 (QBD03_07525) comGA 1514725..1515615 (-) 891 WP_280102664.1 competence type IV pilus ATPase ComGA Machinery gene
  QBD03_RS07530 (QBD03_07530) - 1515734..1516462 (-) 729 WP_280102665.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QBD03_RS07535 (QBD03_07535) - 1516553..1517053 (-) 501 WP_280102666.1 VanZ family protein -
  QBD03_RS07540 (QBD03_07540) - 1517150..1517524 (+) 375 WP_280102667.1 hypothetical protein -
  QBD03_RS07550 (QBD03_07550) - 1517711..1519111 (-) 1401 WP_280102668.1 hypothetical protein -
  QBD03_RS07555 (QBD03_07555) - 1519111..1520181 (-) 1071 WP_280102669.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 32915.78 Da        Isoelectric Point: 6.3840

>NTDB_id=817530 QBD03_RS07525 WP_280102664.1 1514725..1515615(-) (comGA) [Latilactobacillus sakei strain HUP1]
MSTEEKLTLLLKHCAKQHVQDLYFTPTIGGWRLTERRQSDLVTNQELDKPTGTRYLNRLKYMAGMDISETRRAQTGRSEL
QLADQTIYLRLATVGDFLNRESLVIRFIYPIGAIYHCDDQQILAQLTQMSRQAGLILFAGPTGSGKTTSLYHLAQQSMSA
KMVVAIEDPIEIVAPEFLQLQVNDNAGLSYAELLKISLRLRPDTLIIGEIRDLETAQYAVSAALSGHLVLSTIHARSTQG
VVARLLDLGISELQLRACLTGIAYQSLVTKDDVVQAHYELLTGPDYFSKKEGGCDV

Nucleotide


Download         Length: 891 bp        

>NTDB_id=817530 QBD03_RS07525 WP_280102664.1 1514725..1515615(-) (comGA) [Latilactobacillus sakei strain HUP1]
ATGTCAACTGAAGAAAAGCTAACTTTATTACTAAAGCATTGTGCTAAGCAGCATGTGCAAGATCTTTATTTTACACCGAC
AATAGGTGGCTGGCGATTGACGGAACGTCGTCAGAGCGATTTGGTCACCAATCAAGAATTGGATAAACCGACTGGAACGC
GTTATTTAAATCGACTGAAGTATATGGCGGGGATGGATATCAGCGAGACTCGGCGTGCACAAACCGGCCGCTCGGAATTA
CAGCTAGCCGACCAAACAATTTATTTACGCCTAGCGACGGTCGGGGATTTTTTAAATCGCGAAAGCTTGGTCATTCGGTT
TATCTATCCAATTGGTGCCATCTATCATTGTGATGATCAACAGATCTTGGCGCAATTAACGCAGATGAGTCGACAGGCGG
GCTTAATTCTTTTCGCTGGGCCGACTGGTTCTGGTAAAACGACTAGTCTCTATCATCTGGCCCAACAATCAATGAGTGCC
AAGATGGTGGTTGCTATTGAAGATCCGATTGAAATTGTTGCACCTGAGTTTTTGCAACTGCAGGTTAATGATAATGCGGG
ATTGAGCTACGCCGAGCTATTAAAAATTAGTTTACGACTGCGACCGGATACGCTGATTATCGGTGAAATTCGCGATTTAG
AGACAGCTCAATATGCAGTTTCTGCGGCCTTAAGTGGCCACCTGGTATTGAGTACTATTCACGCTCGGAGTACACAGGGC
GTGGTCGCGCGCTTATTAGATCTTGGTATTTCTGAGCTGCAATTGCGGGCCTGTCTAACGGGAATTGCCTACCAATCGTT
GGTGACAAAAGACGACGTTGTGCAAGCCCATTATGAATTATTAACTGGTCCAGATTATTTCTCAAAAAAAGAAGGTGGTT
GCGATGTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Latilactobacillus sakei subsp. sakei 23K

98.311

100

0.983
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

42.642

89.527

0.382
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

40.876

92.568

0.378
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae R6

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae D39

42.264

89.527

0.378
  comGA Lactococcus lactis subsp. cremoris KW2

37.458

100

0.378
  comYA Streptococcus gordonii str. Challis substr. CH1

40.59

91.554

0.372